Variant report

Variant	rs16869054
Chromosome Location	chr8:103092510-103092511
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:103092184..103094951-chr8:103097737..103099786,2	MCF-7	breast:
2	chr8:103089569..103092563-chr8:103094266..103096164,2	K562	blood:
3	chr8:103086669..103088305-chr8:103090497..103092888,2	K562	blood:
4	chr8:103089569..103093166-chr8:103094266..103096675,3	K562	blood:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10282941	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11777456	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16869007	0.93[CHB][hapmap];0.83[YRI][hapmap];0.85[ASN][1000 genomes]
rs16869047	0.85[CHB][hapmap];0.91[JPT][hapmap]
rs16869057	0.84[CHB][hapmap];0.90[JPT][hapmap]
rs16869064	0.85[CHB][hapmap];0.91[JPT][hapmap]
rs16869074	0.85[CHB][hapmap];0.91[JPT][hapmap]
rs16869080	0.84[CHB][hapmap];0.91[JPT][hapmap]
rs2186683	0.85[CHB][hapmap];0.91[JPT][hapmap]
rs635670	0.93[YRI][hapmap]
rs652008	0.84[ASW][hapmap];0.80[YRI][hapmap]
rs6982688	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs6995106	0.85[CHB][hapmap];0.91[JPT][hapmap]
rs7830150	0.85[CHB][hapmap];0.88[CHD][hapmap];0.91[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831411	chr8:102937991-103108140	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv891232	chr8:103001914-103138045	Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
3	nsv891233	chr8:103001914-103162638	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
4	nsv891234	chr8:103020391-103113701	Flanking Active TSS Enhancers Weak transcription Genic enhancers ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv891235	chr8:103032394-103162638	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
6	nsv891237	chr8:103039917-103113701	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv891238	chr8:103055520-103116959	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv891239	chr8:103056517-103162638	Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
9	nsv891240	chr8:103070301-103162638	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
10	esv2754264	chr8:103070824-103170824	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
11	nsv891241	chr8:103079505-103162638	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:103080800-103092800	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr8:103084800-103092600	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr8:103086600-103092800	Weak transcription	Spleen	Spleen
4	chr8:103090800-103093200	Enhancers	H1 Cell Line	embryonic stem cell
5	chr8:103090800-103093800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr8:103091000-103093000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr8:103091000-103093200	Enhancers	Fetal Heart	heart
8	chr8:103091000-103096800	Weak transcription	Primary T cells fromperipheralblood	blood
9	chr8:103091200-103092600	Enhancers	Right Ventricle	heart
10	chr8:103091200-103093000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr8:103091200-103093000	Enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr8:103091200-103093200	Enhancers	Left Ventricle	heart
13	chr8:103091400-103092800	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr8:103091400-103093200	Enhancers	Fetal Muscle Leg	muscle
15	chr8:103091400-103093400	Enhancers	Fetal Brain Female	brain
16	chr8:103091400-103094000	Enhancers	Stomach Smooth Muscle	stomach
17	chr8:103091600-103092800	Enhancers	Fetal Brain Male	brain
18	chr8:103091600-103094600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr8:103091800-103093000	Weak transcription	Psoas Muscle	Psoas
20	chr8:103091800-103093800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr8:103091800-103095200	Enhancers	Colon Smooth Muscle	Colon
22	chr8:103091800-103096600	Weak transcription	Ovary	ovary
23	chr8:103092000-103094200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr8:103092200-103092800	Enhancers	Aorta	Aorta
25	chr8:103092200-103095000	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr8:103092400-103093200	Enhancers	HUES64 Cell Line	embryonic stem cell
27	chr8:103092400-103093200	Enhancers	Right Atrium	heart
28	chr8:103092400-103093600	Enhancers	iPS-15b Cell Line	embryonic stem cell
29	chr8:103092400-103093600	Enhancers	iPS-18 Cell Line	embryonic stem cell
30	chr8:103092400-103093600	Enhancers	iPS-20b Cell Line	embryonic stem cell

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