Variant report

Variant	rs16869081
Chromosome Location	chr8:103107325-103107326
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:103105888..103108288-chr8:103119187..103121586,2	MCF-7	breast:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11993879	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs16868986	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs16869053	1.00[CEU][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs16869062	1.00[CEU][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs16869085	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16892348	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2186683	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs55888515	0.91[AFR][1000 genomes]
rs56338552	0.84[AFR][1000 genomes]
rs56403816	0.91[AFR][1000 genomes]
rs59624010	0.95[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs59916025	0.91[EUR][1000 genomes]
rs61259105	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6995092	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6995106	1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs7000691	1.00[CEU][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7014246	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7014272	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7812418	1.00[CEU][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7815515	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7830150	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs7830927	1.00[CEU][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831411	chr8:102937991-103108140	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv891232	chr8:103001914-103138045	Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
3	nsv891233	chr8:103001914-103162638	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
4	nsv891234	chr8:103020391-103113701	Flanking Active TSS Enhancers Weak transcription Genic enhancers ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv891235	chr8:103032394-103162638	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
6	nsv891237	chr8:103039917-103113701	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv891238	chr8:103055520-103116959	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv891239	chr8:103056517-103162638	Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
9	nsv891240	chr8:103070301-103162638	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
10	esv2754264	chr8:103070824-103170824	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
11	nsv891241	chr8:103079505-103162638	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:103097000-103107400	Weak transcription	Ovary	ovary
2	chr8:103099400-103108200	Weak transcription	Aorta	Aorta
3	chr8:103100600-103107400	Weak transcription	Psoas Muscle	Psoas
4	chr8:103104600-103108600	Enhancers	Rectal Mucosa Donor 31	rectum
5	chr8:103104600-103112600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr8:103104800-103118800	Weak transcription	Primary hematopoietic stem cells	blood
7	chr8:103105400-103107400	Weak transcription	Lung	lung
8	chr8:103105400-103108800	Weak transcription	Left Ventricle	heart
9	chr8:103106000-103117600	Weak transcription	Fetal Heart	heart
10	chr8:103106200-103107400	Weak transcription	Small Intestine	intestine
11	chr8:103106600-103109200	Enhancers	Sigmoid Colon	Sigmoid Colon
12	chr8:103106600-103111400	Enhancers	Primary T helper cells PMA-I stimulated	--
13	chr8:103107000-103107400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr8:103107000-103107600	Enhancers	Right Atrium	heart
15	chr8:103107000-103108000	Enhancers	Rectal Smooth Muscle	rectum
16	chr8:103107000-103108400	Enhancers	Gastric	stomach
17	chr8:103107000-103108400	Enhancers	Stomach Smooth Muscle	stomach
18	chr8:103107000-103111200	Enhancers	Primary T cells fromperipheralblood	blood
19	chr8:103107000-103111600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
20	chr8:103107200-103107400	Flanking Active TSS	GM12878-XiMat	blood
21	chr8:103107200-103108200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
22	chr8:103107200-103108800	Enhancers	Stomach Mucosa	stomach
23	chr8:103107200-103110800	Enhancers	Primary T helper naive cells from peripheral blood	blood
24	chr8:103107200-103111200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
25	chr8:103107200-103111400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood

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