Variant report

Variant	rs16869125
Chromosome Location	chr8:103126042-103126043
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:103125752..103127824-chr8:103128877..103130969,2	K562	blood:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs16869114	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16869115	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16869116	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16869122	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16869127	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16869130	0.86[AFR][1000 genomes]
rs16869132	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891232	chr8:103001914-103138045	Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv891233	chr8:103001914-103162638	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
3	nsv891235	chr8:103032394-103162638	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	nsv891239	chr8:103056517-103162638	Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
5	nsv891240	chr8:103070301-103162638	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
6	esv2754264	chr8:103070824-103170824	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
7	nsv891241	chr8:103079505-103162638	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
8	nsv1020359	chr8:103109921-103318415	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
9	nsv1033829	chr8:103110057-103525696	Strong transcription Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:103119200-103135200	Weak transcription	Spleen	Spleen
2	chr8:103120400-103126200	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr8:103120400-103126400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr8:103120400-103126800	Weak transcription	Esophagus	oesophagus
5	chr8:103120400-103129200	Weak transcription	Pancreas	Pancrea
6	chr8:103120400-103133200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr8:103120400-103133400	Weak transcription	Fetal Brain Female	brain
8	chr8:103120400-103134200	Weak transcription	Lung	lung
9	chr8:103120400-103135400	Weak transcription	Placenta	Placenta
10	chr8:103120800-103126200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr8:103120800-103129400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr8:103120800-103134200	Weak transcription	Fetal Stomach	stomach
13	chr8:103121000-103126400	Weak transcription	Fetal Muscle Trunk	muscle
14	chr8:103121400-103126200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr8:103121400-103126200	Weak transcription	Right Atrium	heart
16	chr8:103121400-103126200	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr8:103121400-103126600	Weak transcription	Adipose Nuclei	Adipose
18	chr8:103121400-103131400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr8:103121600-103133600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr8:103121800-103126200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr8:103121800-103133200	Weak transcription	Fetal Muscle Leg	muscle
22	chr8:103122000-103126600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
23	chr8:103122800-103126200	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr8:103122800-103127800	Enhancers	Fetal Heart	heart
25	chr8:103123400-103127600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
26	chr8:103123400-103134200	Weak transcription	NHDF-Ad	bronchial
27	chr8:103123600-103127200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
28	chr8:103123600-103127400	Enhancers	Fetal Brain Male	brain
29	chr8:103124800-103133800	Weak transcription	Primary T helper cells PMA-I stimulated	--
30	chr8:103124800-103134000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
31	chr8:103125000-103129400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr8:103125200-103126200	Weak transcription	Primary T cells fromperipheralblood	blood
33	chr8:103125200-103126200	Weak transcription	Aorta	Aorta
34	chr8:103125200-103126200	Weak transcription	Gastric	stomach
35	chr8:103125200-103126200	Weak transcription	Left Ventricle	heart
36	chr8:103125200-103126200	Weak transcription	Ovary	ovary
37	chr8:103125200-103126200	Weak transcription	Right Ventricle	heart
38	chr8:103125200-103126400	Weak transcription	Psoas Muscle	Psoas
39	chr8:103125400-103126400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
40	chr8:103125600-103133200	Weak transcription	Primary T cells from cord blood	blood
41	chr8:103125800-103126600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr8:103125800-103127200	Enhancers	Stomach Smooth Muscle	stomach

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