Variant report

Variant	rs16869357
Chromosome Location	chr5:90320152-90320153
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:90318711..90320728-chr5:90678692..90680631,2	K562	blood:
2	chr5:90314128..90316238-chr5:90320139..90322345,2	K562	blood:
3	chr5:90319204..90321360-chr5:90324134..90326175,2	K562	blood:

Variant related genes	Relation type
ENSG00000113369	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs16869220	1.00[EUR][1000 genomes]
rs16869223	1.00[EUR][1000 genomes]
rs16869224	1.00[EUR][1000 genomes]
rs16869260	1.00[EUR][1000 genomes]
rs16869348	1.00[EUR][1000 genomes]
rs1876632	1.00[EUR][1000 genomes]
rs61145978	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529544	chr5:89523963-90412409	Weak transcription Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv882369	chr5:90275825-90344149	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:90309800-90323200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr5:90313400-90321600	Weak transcription	Liver	Liver
3	chr5:90313600-90321400	Weak transcription	Small Intestine	intestine
4	chr5:90314200-90320800	Weak transcription	Fetal Intestine Large	intestine
5	chr5:90314800-90323200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr5:90314800-90327000	Weak transcription	Gastric	stomach
7	chr5:90316600-90323200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr5:90317000-90323200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr5:90317000-90325000	Enhancers	Colon Smooth Muscle	Colon
10	chr5:90317600-90324600	Enhancers	Stomach Mucosa	stomach
11	chr5:90317800-90323000	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr5:90318000-90321800	Enhancers	Rectal Smooth Muscle	rectum
13	chr5:90318200-90320400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr5:90318400-90324200	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr5:90318600-90320600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr5:90318600-90323800	Weak transcription	K562	blood
17	chr5:90318800-90321000	Weak transcription	Duodenum Mucosa	Duodenum
18	chr5:90318800-90321600	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr5:90318800-90321800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr5:90318800-90323200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr5:90318800-90323200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr5:90319000-90320400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr5:90319200-90321600	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr5:90319200-90321600	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr5:90319200-90322200	Weak transcription	A549	lung
26	chr5:90319400-90320400	Enhancers	Psoas Muscle	Psoas
27	chr5:90319400-90322000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr5:90319400-90323200	Weak transcription	HUES48 Cell Line	embryonic stem cell
29	chr5:90319400-90324600	Enhancers	Fetal Lung	lung
30	chr5:90319600-90320200	Enhancers	Brain Anterior Caudate	brain
31	chr5:90319600-90320400	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr5:90319600-90323200	Weak transcription	Fetal Intestine Small	intestine
33	chr5:90319800-90320200	Enhancers	ES-I3 Cell Line	embryonic stem cell
34	chr5:90319800-90321000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr5:90319800-90321000	Enhancers	Fetal Muscle Leg	muscle
36	chr5:90319800-90324400	Enhancers	Fetal Stomach	stomach
37	chr5:90320000-90320200	Enhancers	Adipose Nuclei	Adipose
38	chr5:90320000-90320800	Enhancers	Fetal Kidney	kidney
39	chr5:90320000-90321400	Weak transcription	Sigmoid Colon	Sigmoid Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links