Variant report

Variant	rs16869441
Chromosome Location	chr7:70889525-70889526
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10265903	0.87[ASN][1000 genomes]
rs11972510	0.89[JPT][hapmap];0.88[ASN][1000 genomes]
rs11976167	0.86[CHB][hapmap];0.89[JPT][hapmap];0.85[ASN][1000 genomes]
rs11979289	0.88[ASN][1000 genomes]
rs2068592	1.00[CEU][hapmap];0.86[CHB][hapmap];0.89[JPT][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28557230	0.81[ASN][1000 genomes]
rs58011346	0.87[ASN][1000 genomes]
rs59639465	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59937756	0.81[ASN][1000 genomes]
rs60964959	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61455240	0.85[ASN][1000 genomes]
rs6953864	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs6964977	0.86[CHB][hapmap];0.89[JPT][hapmap];0.88[ASN][1000 genomes]
rs6969444	0.89[JPT][hapmap];0.83[ASN][1000 genomes]
rs73360158	0.87[ASN][1000 genomes]
rs73360172	0.88[ASN][1000 genomes]
rs73360174	0.88[ASN][1000 genomes]
rs73360176	0.88[ASN][1000 genomes]
rs73360181	0.88[ASN][1000 genomes]
rs73360191	0.88[ASN][1000 genomes]
rs73360192	0.88[ASN][1000 genomes]
rs73700929	0.88[ASN][1000 genomes]
rs73702892	0.83[ASN][1000 genomes]
rs962293	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519090	chr7:70085934-71071896	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1015261	chr7:70404302-71255933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:70868200-70892400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr7:70874200-70892600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr7:70879400-70899000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr7:70880000-70891000	Weak transcription	Right Atrium	heart
5	chr7:70880000-70897600	Weak transcription	Right Ventricle	heart
6	chr7:70880800-70899200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr7:70881000-70901200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr7:70886200-70903600	Weak transcription	Aorta	Aorta
9	chr7:70886400-70890600	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr7:70886600-70892400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr7:70886800-70893800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr7:70887400-70892600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr7:70887600-70896400	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr7:70887800-70891200	Weak transcription	Fetal Muscle Leg	muscle
15	chr7:70888000-70890400	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr7:70888000-70890600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr7:70888000-70890800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr7:70888000-70891400	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr7:70888000-70896600	Weak transcription	Fetal Muscle Trunk	muscle
20	chr7:70888200-70892400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr7:70888200-70896400	Weak transcription	Fetal Stomach	stomach
22	chr7:70888200-70897000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr7:70888200-70923000	Weak transcription	Ovary	ovary
24	chr7:70889000-70889600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr7:70889000-70889600	Enhancers	Fetal Lung	lung
26	chr7:70889000-70890200	Enhancers	Fetal Heart	heart
27	chr7:70889000-70890200	Enhancers	HSMMtube	muscle
28	chr7:70889200-70890000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr7:70889200-70890200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr7:70889200-70890200	Enhancers	NH-A	brain
31	chr7:70889200-70893400	Weak transcription	H1 Cell Line	embryonic stem cell
32	chr7:70889400-70889600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr7:70889400-70890000	Weak transcription	Left Ventricle	heart

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