Variant report

Variant	rs16869534
Chromosome Location	chr8:103556877-103556878
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:103556702..103559349-chr8:103559916..103561821,3	MCF-7	breast:
2	chr8:103554141..103557178-chr8:103560582..103564192,4	K562	blood:
3	chr8:103553403..103555856-chr8:103556123..103559694,3	MCF-7	breast:
4	chr8:103547915..103550298-chr8:103554370..103557167,3	K562	blood:

Variant related genes	Relation type
ENSG00000155087	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1000672	0.85[CHB][hapmap];0.87[JPT][hapmap];0.85[ASN][1000 genomes]
rs16869497	1.00[YRI][hapmap]
rs16869498	1.00[YRI][hapmap]
rs16869509	0.82[AMR][1000 genomes]
rs4734639	0.80[ASN][1000 genomes]
rs62523267	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62524851	0.82[AMR][1000 genomes]
rs8180987	0.82[CEU][hapmap];0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33118	chr8:103358567-104068172	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
2	nsv1031769	chr8:103460754-103620283	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv539703	chr8:103460754-103620283	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	esv2762761	chr8:103492356-103625244	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	esv1831575	chr8:103498317-103585093	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	esv1838972	chr8:103498317-103585093	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv1024876	chr8:103512785-103576658	Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
8	esv3419415	chr8:103525141-103575507	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:103550800-103589000	Weak transcription	Right Atrium	heart
2	chr8:103553600-103558800	Weak transcription	Psoas Muscle	Psoas
3	chr8:103553800-103558600	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr8:103554000-103569000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr8:103554200-103559000	Weak transcription	A549	lung
6	chr8:103554400-103565800	Weak transcription	GM12878-XiMat	blood
7	chr8:103554600-103559000	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr8:103555400-103557200	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr8:103555600-103557200	Enhancers	H1 Cell Line	embryonic stem cell
10	chr8:103555600-103557200	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr8:103555600-103557200	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr8:103555800-103557000	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr8:103555800-103557200	Enhancers	H9 Cell Line	embryonic stem cell
14	chr8:103555800-103557200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr8:103556200-103557200	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr8:103556400-103557000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr8:103556400-103557000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr8:103556400-103557400	Enhancers	K562	blood
19	chr8:103556400-103558800	Enhancers	Brain Germinal Matrix	brain
20	chr8:103556600-103557000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr8:103556600-103557200	Enhancers	HUES64 Cell Line	embryonic stem cell
22	chr8:103556600-103557200	Enhancers	Hela-S3	cervix
23	chr8:103556800-103557000	Enhancers	Spleen	Spleen
24	chr8:103556800-103557000	Bivalent Enhancer	NHEK	skin

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