Variant report

Variant	rs16869842
Chromosome Location	chr8:103926372-103926373
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:103922092..103927536-chr8:103936066..103939373,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000253320	Chromatin interaction
ENSG00000244052	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10100951	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs10107743	1.00[JPT][hapmap]
rs16869801	1.00[JPT][hapmap]
rs16869820	0.81[AFR][1000 genomes]
rs16869843	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2304347	0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2304352	0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3824223	0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7015831	0.83[ASN][1000 genomes]
rs7841632	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33118	chr8:103358567-104068172	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	145 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:103913400-103929800	Weak transcription	Psoas Muscle	Psoas
2	chr8:103922200-103929600	Weak transcription	Fetal Intestine Small	intestine
3	chr8:103922800-103929800	Weak transcription	Fetal Brain Male	brain
4	chr8:103922800-103930600	Weak transcription	Ovary	ovary
5	chr8:103923000-103926400	Weak transcription	Colon Smooth Muscle	Colon
6	chr8:103923000-103927200	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr8:103923000-103927200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr8:103923000-103927200	Weak transcription	Pancreas	Pancrea
9	chr8:103923000-103929400	Weak transcription	Left Ventricle	heart
10	chr8:103923000-103929600	Weak transcription	Placenta	Placenta
11	chr8:103923000-103931000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr8:103923000-103931000	Weak transcription	Brain Substantia Nigra	brain
13	chr8:103923000-103931600	Weak transcription	Fetal Stomach	stomach
14	chr8:103923000-103932000	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr8:103923200-103929800	Weak transcription	Brain Anterior Caudate	brain
16	chr8:103923200-103931000	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr8:103923200-103935800	Weak transcription	Fetal Lung	lung
18	chr8:103923400-103931200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
19	chr8:103923400-103932000	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr8:103923600-103926600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr8:103923600-103928800	Weak transcription	A549	lung
22	chr8:103923600-103929200	Weak transcription	Fetal Heart	heart
23	chr8:103923600-103931200	Weak transcription	HMEC	breast
24	chr8:103923600-103931600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
25	chr8:103925600-103926400	Enhancers	Lung	lung
26	chr8:103925600-103926600	Enhancers	Adipose Nuclei	Adipose
27	chr8:103925600-103926600	Enhancers	HSMM	muscle
28	chr8:103925600-103926600	Enhancers	NHLF	lung
29	chr8:103925600-103926800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr8:103925600-103926800	Enhancers	NHDF-Ad	bronchial
31	chr8:103925600-103927000	Enhancers	Right Atrium	heart
32	chr8:103925800-103926400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr8:103925800-103926400	Enhancers	Aorta	Aorta
34	chr8:103925800-103926400	Enhancers	Brain Inferior Temporal Lobe	brain
35	chr8:103925800-103926400	Enhancers	Fetal Muscle Trunk	muscle
36	chr8:103925800-103926400	Enhancers	Fetal Muscle Leg	muscle
37	chr8:103925800-103926400	Enhancers	Right Ventricle	heart
38	chr8:103925800-103926600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr8:103925800-103926600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr8:103925800-103926600	Enhancers	Muscle Satellite Cultured Cells	--
41	chr8:103925800-103926800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr8:103926000-103926400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr8:103926000-103926400	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
44	chr8:103926000-103926400	Enhancers	Skeletal Muscle Male	skeletal muscle
45	chr8:103926000-103926400	Flanking Active TSS	Osteobl	bone
46	chr8:103926000-103926600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr8:103926000-103931800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr8:103926000-103932000	Weak transcription	Small Intestine	intestine
49	chr8:103926000-103932600	Weak transcription	Skeletal Muscle Female	skeletal muscle
50	chr8:103926200-103926600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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