The 2.0 version of rSNPBase

Variant report

Variant rs16869964
Chromosome Location chr5:40403378-40403379
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:46 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:40398600-40404400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
2 chr5:40399600-40404800 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
3 chr5:40399800-40405800 Weak transcription Sigmoid Colon Sigmoid Colon
4 chr5:40400600-40411400 Weak transcription Left Ventricle heart
5 chr5:40400800-40405400 Weak transcription Breast Myoepithelial Primary Cells Breast
6 chr5:40401200-40409600 Enhancers Dnd41 blood
7 chr5:40401400-40404600 Enhancers Primary T helper cells PMA-I stimulated --
8 chr5:40401400-40404600 Enhancers Primary T helper 17 cells PMA-I stimulated --
9 chr5:40401600-40404600 Weak transcription Adipose Nuclei Adipose
10 chr5:40401800-40409600 Enhancers Primary T killer naive cells fromperipheralblood blood
11 chr5:40401800-40410000 Weak transcription HSMMtube muscle
12 chr5:40402200-40404200 Weak transcription Primary T helper naive cells fromperipheralblood blood
13 chr5:40402200-40405400 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
14 chr5:40402200-40405400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
15 chr5:40402200-40410400 Weak transcription Osteobl bone
16 chr5:40402400-40403800 Weak transcription Primary T cells fromperipheralblood blood
17 chr5:40402400-40403800 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
18 chr5:40402400-40404400 Weak transcription Primary T killer memory cells from peripheral blood blood
19 chr5:40402400-40404600 Weak transcription GM12878-XiMat blood
20 chr5:40402400-40405200 Weak transcription A549 lung
21 chr5:40402400-40405400 Weak transcription HSMM muscle
22 chr5:40402400-40406800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
23 chr5:40402400-40411400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
24 chr5:40402600-40403800 Weak transcription Primary neutrophils fromperipheralblood blood
25 chr5:40402600-40403800 Weak transcription Primary T cells from cord blood blood
26 chr5:40402600-40403800 Weak transcription Primary hematopoietic stem cells short term culture blood
27 chr5:40402600-40403800 Weak transcription Primary Natural Killer cells fromperipheralblood blood
28 chr5:40402600-40403800 Weak transcription Fetal Thymus thymus
29 chr5:40402600-40404400 Weak transcription Primary monocytes fromperipheralblood blood
30 chr5:40402600-40404400 Weak transcription Thymus Thymus
31 chr5:40402600-40404400 Weak transcription Monocytes-CD14+_RO01746 blood
32 chr5:40402600-40404600 Weak transcription NHEK skin
33 chr5:40402600-40404800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
34 chr5:40402600-40404800 Weak transcription Muscle Satellite Cultured Cells --
35 chr5:40402600-40404800 Weak transcription Hela-S3 cervix
36 chr5:40402600-40404800 Weak transcription HMEC breast
37 chr5:40402600-40405000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
38 chr5:40402600-40405200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
39 chr5:40402600-40405400 Weak transcription Placenta Placenta
40 chr5:40402600-40406800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
41 chr5:40402600-40408400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
42 chr5:40402600-40409800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
43 chr5:40402600-40410000 Weak transcription Pancreatic Islets Pancreatic Islet
44 chr5:40402800-40404400 Weak transcription Primary T regulatory cells fromperipheralblood blood
45 chr5:40403000-40409800 Enhancers Primary T helper cells fromperipheralblood blood
46 chr5:40403200-40404200 Weak transcription Primary T helper memory cells from peripheral blood 1 blood

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Last update: Aug 31, 2015