Variant report

Variant	rs16870120
Chromosome Location	chr8:104124279-104124280
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:104123177..104125400-chr8:104133035..104136111,3	K562	blood:
2	chr8:104123694..104125224-chr8:104132616..104134410,2	MCF-7	breast:
3	chr8:104123990..104126245-chr8:104127280..104130143,2	K562	blood:
4	chr8:104123501..104124311-chr8:104136953..104137651,2	MCF-7	breast:
5	chr8:104123448..104124377-chr8:104523693..104525026,4	MCF-7	breast:
6	chr8:104123823..104124362-chr8:104219635..104220167,2	MCF-7	breast:
7	chr8:104085933..104086938-chr8:104123471..104124873,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000250929	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1398272	1.00[CHB][hapmap]
rs1473820	1.00[CHB][hapmap]
rs1512350	1.00[CHB][hapmap]
rs1512353	1.00[CHB][hapmap]
rs1512354	1.00[CHB][hapmap]
rs16870122	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16870125	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2132864	1.00[CHB][hapmap]
rs2132866	1.00[CHB][hapmap]
rs2453992	1.00[CHB][hapmap]
rs2454041	1.00[CHB][hapmap]
rs2454042	1.00[CHB][hapmap]
rs2454048	1.00[CHB][hapmap]
rs2515193	1.00[CHB][hapmap]
rs924211	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831413	chr8:104085141-104269789	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases
2	nsv429931	chr8:104097396-104878014	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:104119000-104127800	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr8:104119400-104134000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr8:104121800-104127800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr8:104122000-104124400	Enhancers	Brain Hippocampus Middle	brain
5	chr8:104122000-104126000	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr8:104122000-104134600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr8:104122400-104127000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr8:104122400-104131200	Weak transcription	NH-A	brain
9	chr8:104122600-104126200	Weak transcription	HSMMtube	muscle
10	chr8:104123200-104126400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr8:104123200-104126600	Weak transcription	Osteobl	bone
12	chr8:104123400-104127800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr8:104123600-104132600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr8:104123800-104126400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr8:104123800-104128200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr8:104124000-104124600	Weak transcription	Right Atrium	heart
17	chr8:104124000-104126000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr8:104124200-104124600	Weak transcription	Gastric	stomach
19	chr8:104124200-104127600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
20	chr8:104124200-104127800	Weak transcription	HUES48 Cell Line	embryonic stem cell

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