Variant report

Variant	rs16870261
Chromosome Location	chr8:104220440-104220441
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:104212684..104216362-chr8:104218392..104222186,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000247081	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs58672388	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58990083	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831413	chr8:104085141-104269789	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases
2	nsv429931	chr8:104097396-104878014	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
3	esv1848810	chr8:104128496-104369288	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
4	esv1844303	chr8:104128696-104369090	Genic enhancers Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
5	esv14660	chr8:104182119-104245529	ZNF genes & repeats Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv1015965	chr8:104192086-104361108	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs16870261	FZD6	cis	lymphoblastoid	seeQTL

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:104202400-104222200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr8:104209400-104225400	Weak transcription	Brain Substantia Nigra	brain
3	chr8:104213600-104222200	Weak transcription	Gastric	stomach
4	chr8:104215000-104222800	Enhancers	NHDF-Ad	bronchial
5	chr8:104215000-104224200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr8:104215600-104225000	Weak transcription	Brain Angular Gyrus	brain
7	chr8:104216800-104223200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr8:104217000-104223800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr8:104217200-104223600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr8:104217600-104221200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr8:104217600-104222200	Weak transcription	Right Atrium	heart
12	chr8:104217800-104222800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr8:104218600-104222600	Enhancers	NHLF	lung
14	chr8:104218800-104221200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr8:104218800-104222600	Enhancers	Osteobl	bone
16	chr8:104218800-104222800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr8:104218800-104222800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr8:104218800-104222800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr8:104219000-104220800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr8:104219200-104222200	Weak transcription	Primary hematopoietic stem cells	blood
21	chr8:104219400-104221200	Enhancers	HSMM	muscle
22	chr8:104219400-104222200	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr8:104219600-104220800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr8:104219600-104220800	Enhancers	HUVEC	blood vessel
25	chr8:104219600-104221000	Enhancers	Adipose Nuclei	Adipose
26	chr8:104219600-104222600	Enhancers	Hela-S3	cervix
27	chr8:104219600-104222800	Enhancers	NH-A	brain
28	chr8:104219600-104223400	Enhancers	HMEC	breast
29	chr8:104219800-104220600	Genic enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr8:104219800-104220600	Enhancers	HUES64 Cell Line	embryonic stem cell
31	chr8:104219800-104220600	Enhancers	Cortex derived primary cultured neurospheres	brain
32	chr8:104219800-104220600	Enhancers	A549	lung
33	chr8:104219800-104220600	Enhancers	HSMMtube	muscle
34	chr8:104219800-104220800	Enhancers	ES-I3 Cell Line	embryonic stem cell
35	chr8:104219800-104220800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr8:104219800-104220800	Enhancers	HepG2	liver
37	chr8:104219800-104221000	Enhancers	HUES6 Cell Line	embryonic stem cell
38	chr8:104219800-104221400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr8:104219800-104222800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr8:104219800-104222800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr8:104219800-104223200	Enhancers	NHEK	skin
42	chr8:104219800-104223600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr8:104220000-104220600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
44	chr8:104220000-104220600	Enhancers	HUES48 Cell Line	embryonic stem cell
45	chr8:104220200-104220600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr8:104220200-104220600	Enhancers	Brain Anterior Caudate	brain
47	chr8:104220200-104220800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
48	chr8:104220200-104220800	Enhancers	Brain Cingulate Gyrus	brain
49	chr8:104220200-104222800	Enhancers	Esophagus	oesophagus
50	chr8:104220400-104220600	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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