Variant report

Variant	rs16871036
Chromosome Location	chr8:105196326-105196327
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10505057	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11993130	0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1447070	0.81[ASN][1000 genomes]
rs1562402	0.81[ASN][1000 genomes]
rs16871032	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1868009	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2249124	0.81[ASN][1000 genomes]
rs2441886	0.81[ASN][1000 genomes]
rs2441887	0.83[ASN][1000 genomes]
rs2441900	0.81[ASN][1000 genomes]
rs2511639	0.81[ASN][1000 genomes]
rs2511645	0.81[ASN][1000 genomes]
rs28685021	0.92[EUR][1000 genomes]
rs4339610	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6651195	0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs67581959	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6989523	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7018164	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72667409	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72667412	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72667414	0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs72667415	0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs72685033	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72685058	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72685059	0.94[EUR][1000 genomes]
rs72685060	0.94[EUR][1000 genomes]
rs72685063	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72685064	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72685066	0.90[EUR][1000 genomes]
rs72685068	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72685070	0.92[EUR][1000 genomes]
rs750433	0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7841196	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1847227	chr8:105025912-105251147	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv891251	chr8:105054446-105283340	Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
3	nsv891252	chr8:105106882-105227985	Strong transcription Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv831416	chr8:105137789-105296965	Flanking Active TSS Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
5	esv2762762	chr8:105189986-105247833	Flanking Bivalent TSS/Enh Active TSS Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:105188400-105211800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr8:105193200-105197400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr8:105196000-105196400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr8:105196200-105196600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr8:105196200-105196600	Enhancers	HMEC	breast
6	chr8:105196200-105196800	Enhancers	NHEK	skin

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