Variant report

Variant	rs16871270
Chromosome Location	chr6:11328723-11328724
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:11327957..11331694-chr6:11339618..11342162,3	MCF-7	breast:
2	chr6:11323888..11326664-chr6:11327158..11331364,4	MCF-7	breast:
3	chr6:11228813..11233074-chr6:11326646..11330148,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000111859	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs16871267	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs3734406	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs60984896	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021078	chr6:10819083-11558560	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv538135	chr6:10819083-11558560	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11316200-11329800	Weak transcription	Right Atrium	heart
2	chr6:11319400-11330600	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr6:11319600-11330000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr6:11319600-11330400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr6:11319800-11328800	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr6:11319800-11330600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr6:11319800-11330800	Weak transcription	Fetal Stomach	stomach
8	chr6:11320000-11329800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr6:11320000-11330200	Weak transcription	Gastric	stomach
10	chr6:11320000-11330600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr6:11320200-11329600	Weak transcription	Duodenum Mucosa	Duodenum
12	chr6:11320200-11329800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr6:11320200-11330600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr6:11320400-11329000	Weak transcription	Fetal Muscle Leg	muscle
15	chr6:11320400-11329400	Weak transcription	Pancreas	Pancrea
16	chr6:11322600-11331200	Enhancers	Placenta	Placenta
17	chr6:11324400-11329200	Weak transcription	Colonic Mucosa	Colon
18	chr6:11324400-11329400	Weak transcription	Stomach Mucosa	stomach
19	chr6:11324600-11329200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr6:11324600-11329200	Weak transcription	Adipose Nuclei	Adipose
21	chr6:11324800-11329000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr6:11324800-11329600	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr6:11325000-11330200	Weak transcription	Fetal Kidney	kidney
24	chr6:11325000-11330600	Weak transcription	Spleen	Spleen
25	chr6:11325200-11329600	Weak transcription	Primary hematopoietic stem cells	blood
26	chr6:11325200-11330600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr6:11325400-11330400	Weak transcription	Thymus	Thymus
28	chr6:11326400-11329800	Strong transcription	Monocytes-CD14+_RO01746	blood
29	chr6:11326400-11333600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
30	chr6:11326800-11328800	Strong transcription	Primary B cells from peripheral blood	blood
31	chr6:11326800-11329000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
32	chr6:11326800-11329400	Strong transcription	Primary T cells fromperipheralblood	blood
33	chr6:11327000-11329000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chr6:11327000-11329400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
35	chr6:11327200-11329000	Weak transcription	Fetal Intestine Small	intestine
36	chr6:11327200-11329000	Weak transcription	HepG2	liver
37	chr6:11327200-11329400	Strong transcription	Primary B cells from cord blood	blood
38	chr6:11327400-11329200	Strong transcription	Primary T helper cells fromperipheralblood	blood
39	chr6:11327400-11329200	Weak transcription	Fetal Intestine Large	intestine
40	chr6:11327400-11329400	Weak transcription	Primary neutrophils fromperipheralblood	blood
41	chr6:11327400-11329400	Strong transcription	Primary T cells from cord blood	blood
42	chr6:11327400-11329800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
43	chr6:11327800-11328800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
44	chr6:11327800-11329000	Strong transcription	Fetal Thymus	thymus
45	chr6:11327800-11329200	Strong transcription	Primary monocytes fromperipheralblood	blood
46	chr6:11328000-11329000	Genic enhancers	Primary T helper cells PMA-I stimulated	--
47	chr6:11328000-11329200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr6:11328200-11329400	Enhancers	Placenta Amnion	Placenta Amnion
49	chr6:11328200-11329600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr6:11328200-11329600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

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