Variant report

Variant	rs16871365
Chromosome Location	chr8:105394466-105394467
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1317380	0.87[CHB][hapmap];0.91[CHD][hapmap];0.91[JPT][hapmap];0.91[ASN][1000 genomes]
rs1325	1.00[ASW][hapmap];0.87[CHB][hapmap];0.91[CHD][hapmap];0.91[JPT][hapmap];0.81[LWK][hapmap];0.83[YRI][hapmap];0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1327	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1513025	0.87[CHB][hapmap];0.91[CHD][hapmap];0.91[JPT][hapmap];0.89[ASN][1000 genomes]
rs1513026	0.87[CHB][hapmap];0.91[JPT][hapmap];0.89[ASN][1000 genomes]
rs16871363	0.92[GIH][hapmap]
rs16871364	0.83[CHB][hapmap];0.93[CHD][hapmap];0.95[GIH][hapmap];0.86[JPT][hapmap];1.00[MEX][hapmap];0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs3737535	1.00[ASW][hapmap];0.87[CHB][hapmap];0.91[CHD][hapmap];0.91[JPT][hapmap];0.81[LWK][hapmap];0.83[YRI][hapmap];0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs3793360	0.91[ASN][1000 genomes]
rs3793361	0.91[ASN][1000 genomes]
rs4734793	0.87[CHB][hapmap];0.91[JPT][hapmap];0.89[ASN][1000 genomes]
rs58596729	0.86[ASN][1000 genomes]
rs58903502	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs6989353	0.91[ASN][1000 genomes]
rs6989484	0.87[CHB][hapmap];0.91[JPT][hapmap];0.91[ASN][1000 genomes]
rs6989588	0.87[CHB][hapmap];0.91[JPT][hapmap];0.91[ASN][1000 genomes]
rs6994791	0.87[CHB][hapmap];0.91[JPT][hapmap];0.88[YRI][hapmap];0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs6994920	1.00[ASW][hapmap];0.87[CHB][hapmap];0.91[CHD][hapmap];0.91[JPT][hapmap];0.88[YRI][hapmap];0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7000266	1.00[ASW][hapmap];0.87[CHB][hapmap];0.91[CHD][hapmap];0.91[JPT][hapmap];0.88[YRI][hapmap];0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7012566	1.00[ASW][hapmap];0.87[CHB][hapmap];0.91[CHD][hapmap];0.91[JPT][hapmap];0.88[YRI][hapmap];0.82[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs7012764	1.00[ASW][hapmap];0.83[CHB][hapmap];0.91[CHD][hapmap];0.91[JPT][hapmap];0.88[YRI][hapmap];0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7830021	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016087	chr8:105228670-105934368	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1032775	chr8:105311364-105409972	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1026754	chr8:105382508-106030916	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
4	nsv539709	chr8:105382508-106030916	Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:105390400-105421000	Strong transcription	Liver	Liver
2	chr8:105393400-105395600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr8:105393800-105394800	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr8:105394200-105394600	Enhancers	Monocytes-CD14+_RO01746	blood
5	chr8:105394200-105395000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr8:105394400-105394600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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