Variant report

Variant	rs16871583
Chromosome Location	chr8:105614276-105614277
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:105600800..105603327-chr8:105613543..105616340,3	K562	blood:
2	chr8:105609190..105611773-chr8:105612258..105615333,3	K562	blood:
3	chr8:105603605..105610207-chr8:105613658..105617508,6	K562	blood:

Variant related genes	Relation type
ENSG00000147650	Chromatin interaction
ENSG00000253350	Chromatin interaction

Extended variants
information (count: 92 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:84)

rs_ID	r²[population]
rs10505059	1.00[EUR][1000 genomes]
rs10505061	1.00[EUR][1000 genomes]
rs11986052	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1347780	1.00[EUR][1000 genomes]
rs16871487	1.00[EUR][1000 genomes]
rs16871494	1.00[EUR][1000 genomes]
rs16871501	1.00[EUR][1000 genomes]
rs16871528	1.00[EUR][1000 genomes]
rs16871529	1.00[EUR][1000 genomes]
rs16871532	1.00[EUR][1000 genomes]
rs16871542	1.00[EUR][1000 genomes]
rs16871547	1.00[EUR][1000 genomes]
rs16871570	1.00[EUR][1000 genomes]
rs16871573	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16871574	1.00[EUR][1000 genomes]
rs16871604	1.00[EUR][1000 genomes]
rs16871610	1.00[EUR][1000 genomes]
rs16871627	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16871629	1.00[EUR][1000 genomes]
rs16871659	1.00[EUR][1000 genomes]
rs4478539	1.00[EUR][1000 genomes]
rs4492340	1.00[EUR][1000 genomes]
rs58610142	1.00[EUR][1000 genomes]
rs59552566	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59666618	1.00[EUR][1000 genomes]
rs6468931	1.00[EUR][1000 genomes]
rs6468936	1.00[EUR][1000 genomes]
rs6468937	0.81[YRI][hapmap];0.83[AMR][1000 genomes]
rs6468938	1.00[EUR][1000 genomes]
rs6468942	1.00[EUR][1000 genomes]
rs6981436	1.00[EUR][1000 genomes]
rs6981448	1.00[EUR][1000 genomes]
rs6982444	1.00[EUR][1000 genomes]
rs6982693	1.00[EUR][1000 genomes]
rs6984085	1.00[EUR][1000 genomes]
rs6984951	1.00[EUR][1000 genomes]
rs6985345	1.00[EUR][1000 genomes]
rs6986854	1.00[EUR][1000 genomes]
rs6988703	1.00[EUR][1000 genomes]
rs6988869	1.00[EUR][1000 genomes]
rs6992140	1.00[EUR][1000 genomes]
rs6997991	1.00[EUR][1000 genomes]
rs6998138	1.00[EUR][1000 genomes]
rs7000469	1.00[EUR][1000 genomes]
rs7005906	1.00[EUR][1000 genomes]
rs7009946	1.00[EUR][1000 genomes]
rs7010175	1.00[EUR][1000 genomes]
rs7016642	0.80[YRI][hapmap];0.83[AMR][1000 genomes]
rs73293241	1.00[EUR][1000 genomes]
rs73293264	1.00[EUR][1000 genomes]
rs73295119	0.83[AMR][1000 genomes]
rs73295137	0.83[AMR][1000 genomes]
rs73297124	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73299103	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73299117	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73299119	1.00[EUR][1000 genomes]
rs73299120	1.00[EUR][1000 genomes]
rs73299126	1.00[EUR][1000 genomes]
rs7813227	1.00[EUR][1000 genomes]
rs7813553	0.95[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7813838	1.00[EUR][1000 genomes]
rs7814211	1.00[EUR][1000 genomes]
rs7814284	1.00[EUR][1000 genomes]
rs7815131	0.89[YRI][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7815196	1.00[EUR][1000 genomes]
rs7817448	1.00[EUR][1000 genomes]
rs7819974	1.00[EUR][1000 genomes]
rs7820450	1.00[EUR][1000 genomes]
rs7820552	1.00[EUR][1000 genomes]
rs7821042	1.00[EUR][1000 genomes]
rs7824866	0.83[AMR][1000 genomes]
rs7829983	1.00[EUR][1000 genomes]
rs7832076	1.00[EUR][1000 genomes]
rs7832455	1.00[EUR][1000 genomes]
rs7833483	0.80[YRI][hapmap];0.83[AMR][1000 genomes]
rs7835029	0.85[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7836110	1.00[EUR][1000 genomes]
rs7837072	1.00[EUR][1000 genomes]
rs7837076	1.00[EUR][1000 genomes]
rs7838122	1.00[EUR][1000 genomes]
rs7839019	1.00[EUR][1000 genomes]
rs7841549	1.00[EUR][1000 genomes]
rs7842135	1.00[EUR][1000 genomes]
rs9694695	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016087	chr8:105228670-105934368	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1026754	chr8:105382508-106030916	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
3	nsv539709	chr8:105382508-106030916	Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
4	nsv831417	chr8:105455814-105625608	Weak transcription Genic enhancers Enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
5	nsv508522	chr8:105532034-105614403	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	esv2422460	chr8:105573376-105746329	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv1032476	chr8:105609904-106030916	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
8	nsv539710	chr8:105609904-106030916	Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:105613000-105614800	Enhancers	Dnd41	blood

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