Variant report

Variant	rs16871725
Chromosome Location	chr5:35091622-35091623
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:35091355..35093791-chr5:35095839..35097534,2	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs16871743	0.92[YRI][hapmap];0.89[AFR][1000 genomes]
rs16871820	1.00[MEX][hapmap]
rs16871824	1.00[MEX][hapmap]
rs6897987	1.00[MEX][hapmap]
rs73072984	0.89[AFR][1000 genomes]
rs9687437	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv4790	chr5:35090745-35123632	Enhancers Weak transcription Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35061600-35096000	Weak transcription	Gastric	stomach
2	chr5:35066400-35094600	Weak transcription	HepG2	liver
3	chr5:35080200-35093000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr5:35083600-35094600	Weak transcription	Pancreas	Pancrea
5	chr5:35088800-35114000	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr5:35089800-35093000	Weak transcription	Fetal Intestine Large	intestine
7	chr5:35089800-35113800	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr5:35090000-35091800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr5:35090200-35094600	Weak transcription	Liver	Liver
10	chr5:35090600-35091800	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr5:35091200-35092000	Enhancers	H9 Cell Line	embryonic stem cell
12	chr5:35091200-35093400	Strong transcription	Fetal Intestine Small	intestine
13	chr5:35091400-35091800	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr5:35091600-35092000	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr5:35091600-35092000	Enhancers	Colonic Mucosa	Colon
16	chr5:35091600-35092000	Enhancers	Rectal Mucosa Donor 29	rectum
17	chr5:35091600-35092000	Enhancers	Sigmoid Colon	Sigmoid Colon
18	chr5:35091600-35092200	Enhancers	Lung	lung
19	chr5:35091600-35092600	Enhancers	HUES64 Cell Line	embryonic stem cell
20	chr5:35091600-35092600	Enhancers	NHDF-Ad	bronchial
21	chr5:35091600-35092800	Strong transcription	Placenta	Placenta
22	chr5:35091600-35093000	Enhancers	Rectal Mucosa Donor 31	rectum
23	chr5:35091600-35096600	Enhancers	Stomach Mucosa	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links