Variant report

Variant	rs16871803
Chromosome Location	chr6:11777206-11777207
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:11772697..11774986-chr6:11775176..11777864,2	MCF-7	breast:
2	chr6:11774814..11777232-chr6:11795284..11797623,2	K562	blood:
3	chr6:11774413..11777289-chr6:11791782..11794607,2	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs9462102	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9470077	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758036	chr6:11679753-11822351	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv2759407	chr6:11679753-11822351	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11771600-11779600	Weak transcription	Right Atrium	heart
2	chr6:11771800-11778800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr6:11771800-11779000	Weak transcription	Placenta	Placenta
4	chr6:11771800-11779600	Weak transcription	Lung	lung
5	chr6:11772200-11777800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr6:11772200-11786000	Weak transcription	Gastric	stomach
7	chr6:11772800-11777800	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr6:11773200-11777600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr6:11773400-11778800	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr6:11773600-11778800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr6:11773800-11779200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr6:11774000-11777400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr6:11774000-11779400	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr6:11774000-11791600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr6:11774200-11779000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr6:11774200-11785600	Weak transcription	HMEC	breast
17	chr6:11775000-11777400	Enhancers	Rectal Mucosa Donor 31	rectum
18	chr6:11775000-11777400	Enhancers	Stomach Mucosa	stomach
19	chr6:11775400-11778400	Weak transcription	Primary monocytes fromperipheralblood	blood
20	chr6:11775400-11779000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr6:11775600-11779000	Weak transcription	Monocytes-CD14+_RO01746	blood
22	chr6:11776600-11778000	Enhancers	Fetal Intestine Large	intestine
23	chr6:11776800-11779200	Active TSS	Rectal Mucosa Donor 29	rectum
24	chr6:11777000-11777800	Enhancers	K562	blood
25	chr6:11777000-11779800	Active TSS	Colonic Mucosa	Colon
26	chr6:11777200-11777600	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr6:11777200-11778200	Enhancers	Fetal Intestine Small	intestine
28	chr6:11777200-11779000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr6:11777200-11779600	Active TSS	Duodenum Mucosa	Duodenum
30	chr6:11777200-11785800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

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