Variant report

Variant	rs16872194
Chromosome Location	chr5:73975830-73975831
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:73973338..73977809-chr5:73979493..73982488,4	MCF-7	breast:
2	chr5:73973769..73978130-chr5:73979399..73982413,5	K562	blood:
3	chr5:73974217..73979066-chr5:73979317..73982643,5	K562	blood:
4	chr5:73968225..73971112-chr5:73973488..73976087,2	K562	blood:

Variant related genes	Relation type
ENSG00000049860	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs11959392	0.83[EUR][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs16872194	NCRNA00200	trans	lymphoblastoid	seeQTL
rs16872194	CXCL11	trans	brain	seeQTL
rs16872194	DDX6	trans	brain	seeQTL

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:73966800-73980200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr5:73966800-73980600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr5:73969800-73978800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr5:73969800-73980600	Weak transcription	HMEC	breast
5	chr5:73969800-73980600	Weak transcription	HSMM	muscle
6	chr5:73969800-73980800	Weak transcription	NHLF	lung
7	chr5:73971800-73980200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr5:73973400-73979400	Weak transcription	Placenta	Placenta
9	chr5:73973600-73978600	Weak transcription	NH-A	brain
10	chr5:73973800-73980600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr5:73975200-73977600	Weak transcription	Fetal Intestine Small	intestine
12	chr5:73975200-73980200	Weak transcription	Spleen	Spleen
13	chr5:73975400-73977600	Weak transcription	K562	blood
14	chr5:73975600-73976000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr5:73975600-73976400	Enhancers	Hela-S3	cervix
16	chr5:73975600-73976400	Enhancers	HUVEC	blood vessel
17	chr5:73975800-73976000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr5:73975800-73976200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr5:73975800-73976200	Enhancers	H9 Cell Line	embryonic stem cell
20	chr5:73975800-73976200	Enhancers	HUES6 Cell Line	embryonic stem cell
21	chr5:73975800-73976200	Enhancers	iPS-18 Cell Line	embryonic stem cell
22	chr5:73975800-73976200	Enhancers	HSMMtube	muscle
23	chr5:73975800-73976200	Enhancers	NHEK	skin
24	chr5:73975800-73976200	Enhancers	Osteobl	bone
25	chr5:73975800-73976400	Enhancers	ES-I3 Cell Line	embryonic stem cell
26	chr5:73975800-73976400	Enhancers	HUES64 Cell Line	embryonic stem cell
27	chr5:73975800-73976400	Enhancers	iPS-20b Cell Line	embryonic stem cell
28	chr5:73975800-73976800	Enhancers	HUES48 Cell Line	embryonic stem cell

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