Variant report

Variant	rs16872219
Chromosome Location	chr5:74017808-74017809
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:74017557..74019398-chr5:74064773..74067311,2	K562	blood:
2	chr5:73980026..73982895-chr5:74017239..74018833,2	K562	blood:
3	chr5:74011922..74013768-chr5:74017287..74019347,3	K562	blood:
4	chr5:74015011..74017827-chr5:74019863..74023018,4	K562	blood:
5	chr5:74011922..74013768-chr5:74017287..74019015,2	K562	blood:

Variant related genes	Relation type
ENSG00000207336	Chromatin interaction
ENSG00000049860	Chromatin interaction
ENSG00000164346	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs16872233	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16878945	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv598653	chr5:73992881-74095542	Active TSS Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:73982000-74061800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr5:73982200-74020600	Weak transcription	Fetal Brain Male	brain
3	chr5:73983000-74027000	Weak transcription	Fetal Heart	heart
4	chr5:73983200-74030200	Weak transcription	Small Intestine	intestine
5	chr5:73988400-74021000	Weak transcription	Right Ventricle	heart
6	chr5:73993800-74019800	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr5:73999800-74060800	Weak transcription	Pancreas	Pancrea
8	chr5:73999800-74062200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr5:74002600-74019600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr5:74002600-74030800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr5:74002600-74031800	Weak transcription	Esophagus	oesophagus
12	chr5:74002600-74041200	Weak transcription	Colonic Mucosa	Colon
13	chr5:74002600-74051600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr5:74002600-74061800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr5:74008400-74028800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr5:74008400-74036200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr5:74008400-74047800	Strong transcription	Placenta	Placenta
18	chr5:74008400-74060200	Strong transcription	Primary monocytes fromperipheralblood	blood
19	chr5:74008400-74060200	Strong transcription	Monocytes-CD14+_RO01746	blood
20	chr5:74008600-74044200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr5:74008800-74035200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
22	chr5:74008800-74036000	Strong transcription	Primary neutrophils fromperipheralblood	blood
23	chr5:74009800-74022200	Strong transcription	HMEC	breast
24	chr5:74010000-74020000	Strong transcription	Primary T cells fromperipheralblood	blood
25	chr5:74010000-74036200	Strong transcription	Liver	Liver
26	chr5:74010200-74022200	Strong transcription	Rectal Mucosa Donor 29	rectum
27	chr5:74010200-74036000	Strong transcription	Duodenum Mucosa	Duodenum
28	chr5:74010200-74038200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
29	chr5:74010200-74048000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr5:74010400-74036400	Strong transcription	Rectal Mucosa Donor 31	rectum
31	chr5:74010400-74059600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr5:74011200-74022200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
33	chr5:74011200-74044200	Strong transcription	HUES64 Cell Line	embryonic stem cell
34	chr5:74011400-74036800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr5:74011800-74022400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr5:74012000-74022000	Strong transcription	HUES6 Cell Line	embryonic stem cell
37	chr5:74012000-74051600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr5:74012200-74050400	Strong transcription	Primary T helper cells fromperipheralblood	blood
39	chr5:74012400-74018000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr5:74012600-74018600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr5:74012600-74023000	Strong transcription	Primary T cells from cord blood	blood
42	chr5:74012600-74023200	Strong transcription	Sigmoid Colon	Sigmoid Colon
43	chr5:74012600-74027400	Strong transcription	Left Ventricle	heart
44	chr5:74012600-74027600	Strong transcription	Dnd41	blood
45	chr5:74012600-74034800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
46	chr5:74012800-74036200	Strong transcription	Fetal Intestine Large	intestine
47	chr5:74013000-74021600	Strong transcription	Fetal Thymus	thymus
48	chr5:74013000-74022000	Strong transcription	GM12878-XiMat	blood
49	chr5:74013000-74027800	Strong transcription	Cortex derived primary cultured neurospheres	brain
50	chr5:74013400-74027200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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