Variant report

Variant	rs16872223
Chromosome Location	chr4:21992224-21992225
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1567800	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2007203	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs58188771	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73102666	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73800635	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73800640	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73800655	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9990903	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817467	chr4:21602921-22422816	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:21988400-21992600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr4:21992200-21993200	Enhancers	Rectal Smooth Muscle	rectum
3	chr4:21992200-21993600	Enhancers	Colon Smooth Muscle	Colon

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links