Variant report

Variant	rs16872565
Chromosome Location	chr4:22346400-22346401
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10018144	1.00[MEX][hapmap]
rs13132451	1.00[MEX][hapmap]
rs1392595	1.00[MEX][hapmap]
rs57398797	0.91[AFR][1000 genomes]
rs6448151	0.97[AFR][1000 genomes];0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817467	chr4:21602921-22422816	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv428756	chr4:22239826-22406106	Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:22329000-22389400	Weak transcription	Pancreas	Pancrea
2	chr4:22329800-22349800	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr4:22332200-22349800	Weak transcription	Liver	Liver
4	chr4:22336600-22385400	Weak transcription	Fetal Intestine Large	intestine
5	chr4:22341200-22351400	Weak transcription	Brain Angular Gyrus	brain
6	chr4:22342000-22346600	Weak transcription	Brain Substantia Nigra	brain
7	chr4:22342800-22346600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr4:22343000-22355600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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