Variant report

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11949415	1.00[AMR][1000 genomes]
rs11954925	1.00[AMR][1000 genomes]
rs1509459	1.00[AMR][1000 genomes]
rs16872562	1.00[ASW][hapmap];0.88[YRI][hapmap];1.00[AMR][1000 genomes]
rs4346776	1.00[AMR][1000 genomes]
rs6871782	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6878694	1.00[ASW][hapmap];0.89[YRI][hapmap];1.00[AMR][1000 genomes]
rs6885346	1.00[AMR][1000 genomes]
rs7702407	1.00[ASW][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs7702961	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7709329	1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7718944	1.00[LWK][hapmap];1.00[AMR][1000 genomes]
rs7726811	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs7730534	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7731927	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7737776	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933208	chr5:41879946-42876624	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	112 gene(s)	inside rSNPs	diseases
2	nsv492147	chr5:41902086-42896162	Enhancers Flanking Active TSS Active TSS Genic enhancers Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	113 gene(s)	inside rSNPs	diseases
3	nsv948514	chr5:42270161-42519262	Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:42454800-42471800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr5:42455000-42469600	Weak transcription	Lung	lung
3	chr5:42455000-42474400	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr5:42455000-42477400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr5:42462000-42468200	Weak transcription	Fetal Muscle Leg	muscle
6	chr5:42462000-42468400	Weak transcription	Adipose Nuclei	Adipose
7	chr5:42462000-42471600	Weak transcription	Fetal Intestine Large	intestine
8	chr5:42462000-42472000	Weak transcription	Fetal Lung	lung
9	chr5:42462200-42470000	Weak transcription	Left Ventricle	heart
10	chr5:42462200-42470400	Weak transcription	Fetal Intestine Small	intestine
11	chr5:42462200-42470800	Weak transcription	Aorta	Aorta
12	chr5:42462200-42470800	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr5:42462200-42471000	Weak transcription	Ovary	ovary
14	chr5:42462200-42471600	Weak transcription	Psoas Muscle	Psoas
15	chr5:42462200-42472200	Weak transcription	Fetal Heart	heart
16	chr5:42464400-42470000	Weak transcription	Stomach Smooth Muscle	stomach
17	chr5:42466400-42468400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr5:42466800-42472400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr5:42467000-42469200	Strong transcription	Fetal Stomach	stomach
20	chr5:42467000-42470000	Strong transcription	Liver	Liver
21	chr5:42467800-42470400	Weak transcription	Fetal Muscle Trunk	muscle

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