Variant report

Variant	rs16872656
Chromosome Location	chr4:22448912-22448913
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1020917	0.88[CHB][hapmap];0.93[JPT][hapmap];0.84[ASN][1000 genomes]
rs11933055	0.85[ASN][1000 genomes]
rs1462994	0.83[ASN][1000 genomes]
rs1462997	0.80[CHB][hapmap]
rs1564138	0.88[CHB][hapmap];0.93[JPT][hapmap];0.85[ASN][1000 genomes]
rs1564139	0.88[CHB][hapmap];0.93[JPT][hapmap];0.84[ASN][1000 genomes]
rs16872676	0.81[ASN][1000 genomes]
rs16872728	0.83[CHB][hapmap]
rs7657579	0.94[CHB][hapmap];0.93[JPT][hapmap];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349061	chr4:22379581-22887563	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv878752	chr4:22414023-22501043	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv821634	chr4:22427074-22865948	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:22371600-22449800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr4:22388400-22473600	Weak transcription	Rectal Smooth Muscle	rectum
3	chr4:22388800-22469600	Weak transcription	Colonic Mucosa	Colon
4	chr4:22389200-22473600	Weak transcription	Fetal Brain Male	brain
5	chr4:22390600-22456200	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr4:22390600-22459800	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr4:22393600-22459800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr4:22393800-22453000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr4:22400800-22449600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr4:22400800-22461800	Weak transcription	Gastric	stomach
11	chr4:22416800-22449600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr4:22419200-22476200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr4:22419400-22465800	Weak transcription	HUVEC	blood vessel
14	chr4:22420600-22488000	Weak transcription	Aorta	Aorta
15	chr4:22422000-22453400	Weak transcription	Esophagus	oesophagus
16	chr4:22424400-22457800	Weak transcription	Dnd41	blood
17	chr4:22426000-22461800	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr4:22428600-22460600	Weak transcription	Placenta	Placenta
19	chr4:22429400-22457800	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr4:22430600-22456000	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr4:22432400-22451400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
22	chr4:22432400-22460400	Weak transcription	Small Intestine	intestine
23	chr4:22433800-22479200	Weak transcription	Brain Hippocampus Middle	brain
24	chr4:22434000-22461200	Weak transcription	Brain Anterior Caudate	brain
25	chr4:22434800-22456000	Weak transcription	Brain Substantia Nigra	brain
26	chr4:22436800-22456200	Weak transcription	NHEK	skin
27	chr4:22437400-22476400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr4:22437800-22453400	Weak transcription	Fetal Heart	heart
29	chr4:22437800-22459600	Strong transcription	HUES64 Cell Line	embryonic stem cell
30	chr4:22437800-22465000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
31	chr4:22439200-22451800	Strong transcription	HUES48 Cell Line	embryonic stem cell
32	chr4:22439200-22458000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr4:22439600-22450600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
34	chr4:22441800-22452000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr4:22442400-22450200	Strong transcription	HUES6 Cell Line	embryonic stem cell
36	chr4:22442400-22450200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
37	chr4:22443000-22453000	Weak transcription	Psoas Muscle	Psoas
38	chr4:22443200-22449600	Weak transcription	Fetal Stomach	stomach
39	chr4:22443400-22471200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
40	chr4:22443400-22472400	Weak transcription	Ovary	ovary
41	chr4:22443400-22473600	Weak transcription	Fetal Brain Female	brain
42	chr4:22443600-22449600	Weak transcription	Rectal Mucosa Donor 29	rectum
43	chr4:22443600-22449600	Weak transcription	Rectal Mucosa Donor 31	rectum
44	chr4:22443600-22449800	Weak transcription	Duodenum Mucosa	Duodenum
45	chr4:22443600-22470800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
46	chr4:22443600-22476200	Weak transcription	A549	lung
47	chr4:22443800-22474600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr4:22444000-22470800	Weak transcription	Cortex derived primary cultured neurospheres	brain
49	chr4:22445000-22452800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr4:22445800-22450400	Strong transcription	H1 Cell Line	embryonic stem cell

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