Variant report

Variant	rs16872733
Chromosome Location	chr6:12372289-12372290
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:12343799..12344581-chr6:12371956..12372456,2	MCF-7	breast:
2	chr6:12371513..12373095-chr6:12381448..12383362,2	MCF-7	breast:
3	chr6:12370448..12374214-chr6:12374821..12377575,3	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs60855752	0.82[AFR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72830066	0.87[ASN][1000 genomes]
rs72830067	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9462724	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9462725	0.88[AFR][1000 genomes];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv508394	chr6:12285464-12386745	Strong transcription Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:12369000-12374400	Enhancers	Fetal Intestine Small	intestine
2	chr6:12369600-12373800	Enhancers	Fetal Intestine Large	intestine
3	chr6:12370400-12372800	Enhancers	Liver	Liver
4	chr6:12370800-12372600	Enhancers	Small Intestine	intestine
5	chr6:12370800-12375200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr6:12371200-12372400	Enhancers	Primary neutrophils fromperipheralblood	blood
7	chr6:12371200-12372400	Enhancers	HMEC	breast
8	chr6:12371200-12372400	Enhancers	NHEK	skin
9	chr6:12371200-12372600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr6:12371200-12372600	Enhancers	Rectal Mucosa Donor 31	rectum
11	chr6:12371200-12372800	Enhancers	Stomach Mucosa	stomach
12	chr6:12371400-12372600	Enhancers	Hela-S3	cervix
13	chr6:12371600-12372400	Flanking Active TSS	A549	lung
14	chr6:12371600-12372600	Enhancers	Pancreatic Islets	Pancreatic Islet
15	chr6:12371600-12372600	Enhancers	Sigmoid Colon	Sigmoid Colon
16	chr6:12371600-12376200	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr6:12371800-12372600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
18	chr6:12371800-12373000	Enhancers	Rectal Mucosa Donor 29	rectum
19	chr6:12372000-12372400	Flanking Active TSS	HepG2	liver
20	chr6:12372000-12372600	Enhancers	Aorta	Aorta
21	chr6:12372200-12372600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr6:12372200-12372600	Enhancers	Pancreas	Pancrea
23	chr6:12372200-12373000	Enhancers	Duodenum Mucosa	Duodenum
24	chr6:12372200-12381800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links