Variant report

Variant	rs16872754
Chromosome Location	chr6:12396138-12396139
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs60855752	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72830066	0.91[AMR][1000 genomes]
rs72830067	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72830070	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72832088	0.91[AMR][1000 genomes]
rs7356888	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9462724	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9462725	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:12392200-12396400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr6:12393200-12404400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:12393400-12403200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr6:12395600-12396400	Enhancers	A549	lung
5	chr6:12395800-12403800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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