Variant report

Variant	rs16873017
Chromosome Location	chr4:22706917-22706918
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1032149	0.92[AFR][1000 genomes]
rs16867677	0.96[AFR][1000 genomes]
rs16872958	1.00[AFR][1000 genomes]
rs16872960	1.00[AFR][1000 genomes]
rs16872998	0.87[YRI][hapmap]
rs16873004	0.87[YRI][hapmap]
rs16873006	0.87[YRI][hapmap]
rs16873007	0.87[YRI][hapmap]
rs16873011	0.87[YRI][hapmap]
rs16873013	0.85[YRI][hapmap]
rs16873016	0.87[YRI][hapmap]
rs16873063	0.92[AFR][1000 genomes]
rs16873065	0.84[AFR][1000 genomes]
rs16873066	0.92[AFR][1000 genomes]
rs57213747	1.00[AFR][1000 genomes]
rs57607656	1.00[AFR][1000 genomes]
rs58780439	1.00[AFR][1000 genomes]
rs58866108	1.00[AFR][1000 genomes]
rs59459193	1.00[AFR][1000 genomes]
rs59572021	1.00[AFR][1000 genomes]
rs60258746	1.00[AFR][1000 genomes]
rs61248265	1.00[AFR][1000 genomes]
rs61275454	1.00[AFR][1000 genomes]
rs61389793	1.00[AFR][1000 genomes]
rs61478801	1.00[AFR][1000 genomes]
rs61568419	1.00[AFR][1000 genomes]
rs73106185	1.00[AFR][1000 genomes]
rs73106186	1.00[AFR][1000 genomes]
rs73106191	1.00[AFR][1000 genomes]
rs73108259	1.00[AFR][1000 genomes]
rs73108261	1.00[AFR][1000 genomes]
rs73108262	1.00[AFR][1000 genomes]
rs73108268	1.00[AFR][1000 genomes]
rs73108271	1.00[AFR][1000 genomes]
rs73109708	1.00[AFR][1000 genomes]
rs73109715	1.00[AFR][1000 genomes]
rs73109791	1.00[AFR][1000 genomes]
rs73111615	0.92[AFR][1000 genomes]
rs73111628	0.92[AFR][1000 genomes]
rs73113414	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349061	chr4:22379581-22887563	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv821634	chr4:22427074-22865948	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv829883	chr4:22666326-22842517	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:22699200-22737600	Weak transcription	Duodenum Mucosa	Duodenum
2	chr4:22699600-22717000	Weak transcription	Fetal Intestine Large	intestine
3	chr4:22701600-22711400	Weak transcription	Liver	Liver
4	chr4:22702600-22752600	Weak transcription	Fetal Intestine Small	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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