Variant report

Variant	rs16873094
Chromosome Location	chr6:12606226-12606227
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:12234021..12234923-chr6:12605748..12606307,3	MCF-7	breast:
2	chr6:12234096..12234754-chr6:12605862..12606587,2	MCF-7	breast:
3	chr11:118796956..118799852-chr6:12604913..12606838,2	MCF-7	breast:
4	chr6:12292396..12293182-chr6:12605557..12606416,4	MCF-7	breast:
5	chr6:12605717..12606371-chr6:12893802..12894751,2	MCF-7	breast:
6	chr6:12148334..12149885-chr6:12606136..12608631,2	K562	blood:
7	chr6:12606093..12606619-chr6:12893847..12894513,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs16873341	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470801	chr6:12559239-12666093	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv3521000	chr6:12561306-13128519	Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv3521001	chr6:12561306-13128519	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv462638	chr6:12569231-12651249	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv600991	chr6:12569231-12651249	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs16873094	ANXA1	trans	lymphoblastoid	seeQTL

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:12595800-12608200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr6:12602800-12606400	Weak transcription	Psoas Muscle	Psoas
3	chr6:12603000-12608200	Weak transcription	NH-A	brain
4	chr6:12603400-12608400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr6:12603600-12606600	Enhancers	A549	lung
6	chr6:12603600-12607800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr6:12603600-12608200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr6:12603800-12607200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr6:12603800-12607400	Weak transcription	NHEK	skin
10	chr6:12603800-12607800	Weak transcription	Primary neutrophils fromperipheralblood	blood
11	chr6:12603800-12608000	Weak transcription	HSMM	muscle
12	chr6:12603800-12608200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr6:12603800-12608400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr6:12603800-12608400	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr6:12603800-12608400	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr6:12603800-12608400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr6:12603800-12608600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr6:12604400-12606400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr6:12605800-12608400	Enhancers	HUVEC	blood vessel
20	chr6:12606000-12606400	Enhancers	Skeletal Muscle Male	skeletal muscle
21	chr6:12606000-12606600	Enhancers	Primary B cells from peripheral blood	blood
22	chr6:12606000-12606600	Enhancers	Liver	Liver
23	chr6:12606000-12606600	Active TSS	Brain Anterior Caudate	brain
24	chr6:12606000-12606600	Enhancers	NHDF-Ad	bronchial
25	chr6:12606000-12606800	Flanking Active TSS	GM12878-XiMat	blood
26	chr6:12606000-12607000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr6:12606200-12606400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr6:12606200-12606400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
29	chr6:12606200-12606400	Enhancers	Muscle Satellite Cultured Cells	--
30	chr6:12606200-12606400	Flanking Bivalent TSS/Enh	Adipose Nuclei	Adipose
31	chr6:12606200-12606400	Enhancers	Brain Angular Gyrus	brain
32	chr6:12606200-12606400	Enhancers	Brain Cingulate Gyrus	brain
33	chr6:12606200-12606400	Flanking Active TSS	Brain Hippocampus Middle	brain
34	chr6:12606200-12606400	Enhancers	Brain Inferior Temporal Lobe	brain
35	chr6:12606200-12606400	Enhancers	Duodenum Mucosa	Duodenum
36	chr6:12606200-12606400	Enhancers	Rectal Smooth Muscle	rectum
37	chr6:12606200-12606400	Enhancers	K562	blood
38	chr6:12606200-12606600	Enhancers	Primary monocytes fromperipheralblood	blood
39	chr6:12606200-12606600	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr6:12606200-12606600	Enhancers	Colon Smooth Muscle	Colon
41	chr6:12606200-12606600	Flanking Active TSS	Osteobl	bone
42	chr6:12606200-12606800	Enhancers	HMEC	breast
43	chr6:12606200-12606800	Enhancers	Monocytes-CD14+_RO01746	blood
44	chr6:12606200-12608200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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