Variant report

Variant	rs16873306
Chromosome Location	chr5:75604915-75604916
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10062226	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs13161762	0.90[EUR][1000 genomes]
rs13360698	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17566938	0.90[EUR][1000 genomes]
rs17651853	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34132911	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34229670	0.93[EUR][1000 genomes]
rs34455033	0.90[EUR][1000 genomes]
rs34839931	1.00[EUR][1000 genomes]
rs35548911	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027368	chr5:74759999-75663712	Active TSS Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv870415	chr5:75526088-75738412	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:75595200-75605200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr5:75601800-75605800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr5:75604200-75614200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr5:75604600-75605800	Weak transcription	Fetal Thymus	thymus
5	chr5:75604800-75605000	Enhancers	Monocytes-CD14+_RO01746	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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