Variant report

Variant	rs16873541
Chromosome Location	chr5:75935061-75935062
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:75903037..75905690-chr5:75932365..75935110,2	K562	blood:
2	chr5:75934487..75936821-chr5:75943605..75946585,2	MCF-7	breast:
3	chr5:75897714..75898323-chr5:75934762..75935296,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000249713	Chromatin interaction
ENSG00000145703	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs16873606	1.00[AMR][1000 genomes]
rs35544895	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019669	chr5:75836365-76477788	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	nsv1031881	chr5:75917033-75946265	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv1017025	chr5:75926278-75946265	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1035135	chr5:75927027-76092058	Strong transcription Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:75882600-75969400	Weak transcription	Stomach Mucosa	stomach
2	chr5:75903800-75936200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr5:75903800-75943600	Weak transcription	Spleen	Spleen
4	chr5:75914200-75953800	Weak transcription	Colonic Mucosa	Colon
5	chr5:75918000-75943400	Weak transcription	Fetal Intestine Small	intestine
6	chr5:75918200-75943600	Weak transcription	Rectal Smooth Muscle	rectum
7	chr5:75919200-75943600	Weak transcription	Fetal Intestine Large	intestine
8	chr5:75919200-75955400	Weak transcription	Fetal Kidney	kidney
9	chr5:75919400-75938200	Weak transcription	Pancreas	Pancrea
10	chr5:75919400-75944200	Weak transcription	Fetal Lung	lung
11	chr5:75921600-75938000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr5:75922800-75938000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr5:75923000-75938000	Weak transcription	Gastric	stomach
14	chr5:75923000-75938400	Weak transcription	Fetal Thymus	thymus
15	chr5:75923000-75944400	Strong transcription	Primary T cells fromperipheralblood	blood
16	chr5:75923400-75936200	Weak transcription	Fetal Stomach	stomach
17	chr5:75924200-75943600	Weak transcription	Ovary	ovary
18	chr5:75924800-75936200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
19	chr5:75926200-75938000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
20	chr5:75926200-75943800	Strong transcription	Primary T cells from cord blood	blood
21	chr5:75928400-75937000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr5:75929400-75943800	Strong transcription	Primary T helper cells fromperipheralblood	blood
23	chr5:75929800-75938000	Weak transcription	NH-A	brain
24	chr5:75929800-75943800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
25	chr5:75929800-75945400	Weak transcription	H1 Cell Line	embryonic stem cell
26	chr5:75930400-75944400	Strong transcription	Primary T helper cells PMA-I stimulated	--
27	chr5:75931400-75943800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
28	chr5:75931600-75943600	Weak transcription	Lung	lung
29	chr5:75932200-75936200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
30	chr5:75932200-75945400	Weak transcription	H9 Cell Line	embryonic stem cell
31	chr5:75932600-75938000	Weak transcription	NHLF	lung
32	chr5:75932800-75935200	Strong transcription	Placenta	Placenta
33	chr5:75932800-75937600	Weak transcription	Muscle Satellite Cultured Cells	--
34	chr5:75932800-75938000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
35	chr5:75933200-75937000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr5:75933200-75938000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
37	chr5:75933400-75935400	Genic enhancers	Monocytes-CD14+_RO01746	blood
38	chr5:75933400-75935600	Genic enhancers	Primary monocytes fromperipheralblood	blood
39	chr5:75933800-75935400	Enhancers	Primary B cells from cord blood	blood
40	chr5:75933800-75938000	Weak transcription	Rectal Mucosa Donor 29	rectum
41	chr5:75934000-75938000	Weak transcription	Duodenum Mucosa	Duodenum
42	chr5:75934200-75935200	Enhancers	HUES48 Cell Line	embryonic stem cell
43	chr5:75934200-75935200	Enhancers	iPS-15b Cell Line	embryonic stem cell
44	chr5:75934400-75935200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr5:75934400-75935600	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
46	chr5:75934400-75943400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
47	chr5:75934400-75945000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
48	chr5:75934600-75935600	Enhancers	Adipose Nuclei	Adipose
49	chr5:75934600-75935600	Strong transcription	HepG2	liver
50	chr5:75934600-75935600	Enhancers	HUVEC	blood vessel

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