Variant report

Variant	rs16873689
Chromosome Location	chr6:45677818-45677819
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:45386524..45392794-chr6:45676366..45680002,8	MCF-7	breast:
2	chr6:45388351..45392469-chr6:45677058..45681345,6	MCF-7	breast:
3	chr6:45677669..45679804-chr6:45680986..45684570,3	MCF-7	breast:
4	chr6:45575303..45577184-chr6:45677286..45680162,2	MCF-7	breast:
5	chr6:45626348..45629264-chr6:45676046..45679012,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000124813	Chromatin interaction
ENSG00000271857	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs12526609	0.84[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs12527144	0.84[AFR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028393	chr6:44875558-45822335	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv538211	chr6:44875558-45822335	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv532024	chr6:45475088-45982640	Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:45668000-45678000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr6:45671000-45678000	Weak transcription	NHLF	lung
3	chr6:45671200-45678000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr6:45672400-45678000	Weak transcription	NHDF-Ad	bronchial
5	chr6:45672600-45678000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr6:45674400-45678200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr6:45675600-45678000	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr6:45675600-45678000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr6:45675800-45678000	Enhancers	Hela-S3	cervix
10	chr6:45676800-45678000	Weak transcription	NH-A	brain
11	chr6:45676800-45679000	Enhancers	Monocytes-CD14+_RO01746	blood
12	chr6:45677000-45679000	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr6:45677400-45682200	Weak transcription	HMEC	breast
14	chr6:45677600-45678400	Enhancers	Muscle Satellite Cultured Cells	--
15	chr6:45677600-45678800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr6:45677600-45678800	Enhancers	Primary B cells from peripheral blood	blood
17	chr6:45677600-45678800	Flanking Active TSS	GM12878-XiMat	blood
18	chr6:45677800-45678600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
19	chr6:45677800-45678600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
20	chr6:45677800-45679000	Enhancers	Osteobl	bone
21	chr6:45677800-45679200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--

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