Variant report

Variant	rs16874161
Chromosome Location	chr6:46014684-46014685
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs16874143	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17461934	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6921518	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6930769	1.00[CEU][hapmap];0.95[YRI][hapmap];0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6940735	1.00[CEU][hapmap];0.89[YRI][hapmap];0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73448968	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7739464	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7773334	1.00[CEU][hapmap];0.88[YRI][hapmap]
rs9463168	1.00[CEU][hapmap];0.89[YRI][hapmap]
rs9472669	1.00[CEU][hapmap];0.89[YRI][hapmap]
rs9472670	1.00[CEU][hapmap]
rs9472673	1.00[CEU][hapmap];0.89[YRI][hapmap];0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9472678	0.91[CEU][hapmap];0.94[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428482	chr6:45926644-46050182	Genic enhancers Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1025846	chr6:45955173-46047269	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:46006200-46016400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:46010400-46015200	Enhancers	Skeletal Muscle Female	skeletal muscle
3	chr6:46010600-46014800	Enhancers	Skeletal Muscle Male	skeletal muscle
4	chr6:46010600-46015000	Enhancers	Psoas Muscle	Psoas
5	chr6:46010600-46015200	Enhancers	Fetal Heart	heart
6	chr6:46010600-46016200	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr6:46010800-46016200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr6:46011800-46020200	Weak transcription	Lung	lung
9	chr6:46012800-46016200	Weak transcription	Right Ventricle	heart
10	chr6:46013000-46017200	Weak transcription	Hela-S3	cervix
11	chr6:46013000-46020200	Weak transcription	Left Ventricle	heart
12	chr6:46013000-46021400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr6:46013200-46015000	Enhancers	Fetal Intestine Large	intestine
14	chr6:46013200-46016600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr6:46013400-46016200	Weak transcription	Adipose Nuclei	Adipose
16	chr6:46013400-46016200	Weak transcription	Right Atrium	heart
17	chr6:46014000-46017800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr6:46014200-46015000	Enhancers	Fetal Intestine Small	intestine
19	chr6:46014400-46015000	Enhancers	Rectal Mucosa Donor 31	rectum

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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