Variant report

Variant	rs16874170
Chromosome Location	chr6:13473046-13473047
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs60148958	1.00[AFR][1000 genomes]
rs62385805	0.95[AFR][1000 genomes]
rs62385806	0.95[AFR][1000 genomes]
rs62385809	0.95[AFR][1000 genomes]
rs982391	0.95[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532021	chr6:13232627-13805381	Active TSS Genic enhancers Strong transcription Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv1028533	chr6:13239059-13484814	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv538136	chr6:13239059-13484814	Strong transcription Weak transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv1033620	chr6:13419730-13571788	Weak transcription Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv462640	chr6:13426539-13519434	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv600994	chr6:13426539-13519434	Bivalent/Poised TSS Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
7	nsv470802	chr6:13441424-13519371	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13452200-13483400	Weak transcription	Gastric	stomach
2	chr6:13454400-13485000	Weak transcription	Colonic Mucosa	Colon
3	chr6:13455200-13484400	Weak transcription	Small Intestine	intestine
4	chr6:13455200-13484600	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr6:13455400-13481000	Weak transcription	HUVEC	blood vessel
6	chr6:13462800-13484800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr6:13463200-13481000	Weak transcription	A549	lung
8	chr6:13463400-13476600	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr6:13463600-13473200	Weak transcription	HepG2	liver
10	chr6:13463600-13484400	Weak transcription	Primary T cells from cord blood	blood
11	chr6:13463800-13484600	Weak transcription	Duodenum Mucosa	Duodenum
12	chr6:13464600-13476400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr6:13465200-13485000	Weak transcription	Rectal Smooth Muscle	rectum
14	chr6:13466400-13473400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr6:13466800-13474200	Weak transcription	Hela-S3	cervix
16	chr6:13467000-13478600	Weak transcription	Thymus	Thymus
17	chr6:13467200-13473800	Weak transcription	Primary B cells from cord blood	blood
18	chr6:13467800-13473400	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr6:13467800-13474800	Weak transcription	Colon Smooth Muscle	Colon
20	chr6:13468000-13473400	Weak transcription	Esophagus	oesophagus
21	chr6:13468200-13474000	Weak transcription	Primary monocytes fromperipheralblood	blood
22	chr6:13468200-13474600	Weak transcription	Liver	Liver
23	chr6:13468200-13477000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr6:13469200-13473600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr6:13469200-13480000	Weak transcription	Aorta	Aorta
26	chr6:13469400-13485800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr6:13470000-13473200	Enhancers	NHDF-Ad	bronchial
28	chr6:13470000-13474200	Enhancers	Right Atrium	heart
29	chr6:13470400-13474600	Enhancers	Right Ventricle	heart
30	chr6:13470600-13474800	Weak transcription	HMEC	breast
31	chr6:13470800-13473200	Enhancers	Brain Angular Gyrus	brain
32	chr6:13470800-13473400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr6:13470800-13474000	Weak transcription	Monocytes-CD14+_RO01746	blood
34	chr6:13470800-13474800	Enhancers	Spleen	Spleen
35	chr6:13470800-13477400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr6:13470800-13478800	Weak transcription	NHLF	lung
37	chr6:13470800-13480200	Weak transcription	NH-A	brain
38	chr6:13470800-13483600	Weak transcription	Fetal Stomach	stomach
39	chr6:13471000-13475600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
40	chr6:13471000-13485400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr6:13471000-13485600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr6:13471200-13474000	Weak transcription	HUES6 Cell Line	embryonic stem cell
43	chr6:13471200-13474800	Weak transcription	Adipose Nuclei	Adipose
44	chr6:13471200-13478800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
45	chr6:13471200-13483400	Weak transcription	H9 Cell Line	embryonic stem cell
46	chr6:13471200-13483400	Weak transcription	Duodenum Smooth Muscle	Duodenum
47	chr6:13471400-13478600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
48	chr6:13471400-13478600	Weak transcription	Dnd41	blood
49	chr6:13471400-13480400	Weak transcription	Fetal Lung	lung
50	chr6:13471400-13484200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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