Variant report

Variant	rs16874675
Chromosome Location	chr5:5065501-5065502
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10041066	0.87[AFR][1000 genomes]
rs10056566	1.00[CEU][hapmap];0.84[YRI][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10065398	0.82[EUR][1000 genomes]
rs10067991	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap]
rs10512763	1.00[CEU][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11951905	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs11955692	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13435958	0.87[AFR][1000 genomes]
rs13436478	0.87[AFR][1000 genomes]
rs16874638	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.81[TSI][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16874650	1.00[CEU][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16874677	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs171607	1.00[CEU][hapmap]
rs2173920	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2399752	0.87[AFR][1000 genomes]
rs249449	1.00[CEU][hapmap];1.00[GIH][hapmap]
rs249451	1.00[CEU][hapmap]
rs249454	1.00[CEU][hapmap]
rs249456	1.00[CEU][hapmap]
rs61119570	0.89[AFR][1000 genomes]
rs6868782	0.90[EUR][1000 genomes]
rs6869270	0.85[EUR][1000 genomes]
rs6879550	0.90[EUR][1000 genomes]
rs6884449	0.90[EUR][1000 genomes]
rs6889343	0.90[EUR][1000 genomes]
rs72650149	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72650152	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72650154	0.90[EUR][1000 genomes]
rs7714248	0.90[EUR][1000 genomes]
rs7727545	0.90[EUR][1000 genomes]
rs9313096	0.87[AFR][1000 genomes]
rs9313097	0.87[AFR][1000 genomes]
rs9313098	0.86[AFR][1000 genomes]
rs9313099	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021653	chr5:4932992-5201887	Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	esv2757980	chr5:4980876-5184615	Enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	esv2759318	chr5:4980876-5184615	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	nsv1024784	chr5:4980979-5391231	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	nsv830194	chr5:5002459-5187667	Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:5051200-5066400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr5:5062800-5065600	Enhancers	HepG2	liver
3	chr5:5063400-5065800	Weak transcription	Pancreas	Pancrea
4	chr5:5064400-5066200	Weak transcription	Adipose Nuclei	Adipose
5	chr5:5064400-5066200	Weak transcription	Ovary	ovary
6	chr5:5064800-5066000	Weak transcription	NHEK	skin
7	chr5:5065000-5066000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr5:5065000-5066000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr5:5065000-5066200	Weak transcription	Fetal Kidney	kidney

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