Variant report

Variant	rs16875502
Chromosome Location	chr5:5380741-5380742
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:5379168..5381138-chr5:5386362..5389175,2	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11134112	0.87[EUR][1000 genomes]
rs11134113	0.84[EUR][1000 genomes]
rs11134114	0.84[EUR][1000 genomes]
rs11743860	0.89[EUR][1000 genomes]
rs11745458	0.90[EUR][1000 genomes]
rs11745463	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11748854	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11750848	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13172631	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16875378	0.98[ASN][1000 genomes]
rs16875467	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16875474	1.00[ASN][1000 genomes]
rs16875480	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16875486	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16875493	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16875503	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs3935571	0.90[EUR][1000 genomes]
rs41418444	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55758531	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55930845	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55986458	0.89[EUR][1000 genomes]
rs56024322	0.89[EUR][1000 genomes]
rs57657417	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60591667	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs66478976	0.90[EUR][1000 genomes]
rs66550117	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66706717	0.91[EUR][1000 genomes]
rs67531547	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67745304	0.90[EUR][1000 genomes]
rs67790736	0.89[EUR][1000 genomes]
rs67969635	0.91[EUR][1000 genomes]
rs72726078	0.86[EUR][1000 genomes]
rs72726093	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72726095	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024784	chr5:4980979-5391231	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1032719	chr5:5102763-5387406	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv537621	chr5:5102763-5387406	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs16875502	ADAMTS16	cis	parietal	SCAN

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:5370600-5383000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr5:5373400-5381400	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr5:5376200-5383600	Weak transcription	Spleen	Spleen
4	chr5:5376600-5381800	Weak transcription	Pancreas	Pancrea
5	chr5:5378400-5382400	Enhancers	Fetal Brain Male	brain
6	chr5:5378600-5382800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr5:5379000-5384400	Weak transcription	Adipose Nuclei	Adipose
8	chr5:5379800-5381200	Enhancers	Brain Substantia Nigra	brain
9	chr5:5380000-5380800	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr5:5380000-5381000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr5:5380000-5381000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
12	chr5:5380400-5380800	Weak transcription	Brain Cingulate Gyrus	brain
13	chr5:5380400-5380800	Weak transcription	Brain Hippocampus Middle	brain
14	chr5:5380400-5382600	Enhancers	Fetal Brain Female	brain
15	chr5:5380400-5382600	Enhancers	Fetal Muscle Leg	muscle

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