Variant report

Variant	rs16875609
Chromosome Location	chr5:5470026-5470027
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:5443380..5446232-chr5:5469265..5471391,2	K562	blood:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1473230	1.00[ASW][hapmap];1.00[CEU][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap]
rs16875568	0.94[CHB][hapmap];0.94[JPT][hapmap]
rs16875578	0.89[CHB][hapmap];0.94[JPT][hapmap]
rs16875584	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16875589	0.89[CHB][hapmap];0.94[JPT][hapmap]
rs16875590	0.88[CHB][hapmap];0.94[JPT][hapmap]
rs16875597	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs16875617	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap]
rs16875618	1.00[CEU][hapmap];1.00[GIH][hapmap];0.87[LWK][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap]
rs16875619	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap]
rs16900246	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2306349	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3806873	1.00[CEU][hapmap];1.00[GIH][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap]
rs3806874	1.00[CEU][hapmap];1.00[GIH][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap]
rs4283757	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4702268	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs4702269	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap]
rs6874736	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757981	chr5:5447098-5764620	Enhancers Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	esv2759319	chr5:5447098-5764620	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS	Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:5430200-5478800	Weak transcription	Stomach Mucosa	stomach
2	chr5:5433400-5495200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr5:5436600-5470600	Strong transcription	Monocytes-CD14+_RO01746	blood
4	chr5:5436600-5471400	Strong transcription	Hela-S3	cervix
5	chr5:5436600-5478200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr5:5436800-5470400	Strong transcription	HUES64 Cell Line	embryonic stem cell
7	chr5:5436800-5470600	Strong transcription	Primary monocytes fromperipheralblood	blood
8	chr5:5437200-5470600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr5:5437200-5477000	Strong transcription	Primary T helper cells fromperipheralblood	blood
10	chr5:5437400-5470800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
11	chr5:5437400-5480000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr5:5437600-5470600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr5:5437800-5470600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
14	chr5:5439600-5470600	Strong transcription	Dnd41	blood
15	chr5:5440000-5470600	Strong transcription	Primary T cells fromperipheralblood	blood
16	chr5:5440800-5471600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr5:5441400-5470400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr5:5441600-5470600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
19	chr5:5442400-5475800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
20	chr5:5448800-5470400	Strong transcription	Primary B cells from cord blood	blood
21	chr5:5452600-5472000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr5:5453200-5470400	Strong transcription	Fetal Muscle Trunk	muscle
23	chr5:5453800-5470600	Strong transcription	Primary T cells from cord blood	blood
24	chr5:5457000-5470400	Strong transcription	Fetal Lung	lung
25	chr5:5458600-5495000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr5:5458800-5474400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
27	chr5:5460000-5481600	Weak transcription	Pancreatic Islets	Pancreatic Islet
28	chr5:5461000-5470600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr5:5462400-5494600	Weak transcription	Colonic Mucosa	Colon
30	chr5:5463000-5474800	Weak transcription	Brain Angular Gyrus	brain
31	chr5:5463000-5474800	Weak transcription	Placenta Amnion	Placenta Amnion
32	chr5:5463000-5493800	Weak transcription	Fetal Heart	heart
33	chr5:5463400-5480800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
34	chr5:5463600-5474800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
35	chr5:5463800-5475200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr5:5463800-5483600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
37	chr5:5464400-5474600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
38	chr5:5464400-5476600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr5:5464800-5474800	Weak transcription	NHLF	lung
40	chr5:5464800-5475600	Weak transcription	Rectal Smooth Muscle	rectum
41	chr5:5465000-5474400	Weak transcription	H9 Cell Line	embryonic stem cell
42	chr5:5465000-5474800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr5:5465000-5475200	Weak transcription	Thymus	Thymus
44	chr5:5465000-5475800	Weak transcription	Pancreas	Pancrea
45	chr5:5465200-5474400	Weak transcription	Aorta	Aorta
46	chr5:5465200-5474400	Weak transcription	Small Intestine	intestine
47	chr5:5465200-5474800	Weak transcription	Fetal Intestine Small	intestine
48	chr5:5465200-5474800	Weak transcription	Skeletal Muscle Male	skeletal muscle
49	chr5:5465200-5475200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr5:5465200-5475200	Weak transcription	Esophagus	oesophagus

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