Variant report

Variant	rs16876818
Chromosome Location	chr7:11380873-11380874
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:11251507..11252169-chr7:11380655..11381512,2	MCF-7	breast:
2	chr7:11012802..11015105-chr7:11379286..11381051,2	MCF-7	breast:
3	chr7:10929007..10929956-chr7:11380303..11381142,3	MCF-7	breast:
4	chr7:11193379..11193920-chr7:11380707..11381612,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000106443	Chromatin interaction

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10229443	1.00[ASN][1000 genomes]
rs10233772	1.00[ASN][1000 genomes]
rs10244924	1.00[ASN][1000 genomes]
rs10245115	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10269602	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10272912	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs16876820	1.00[ASN][1000 genomes]
rs17164189	0.87[EUR][1000 genomes]
rs17164437	1.00[ASN][1000 genomes]
rs28885772	0.89[ASN][1000 genomes]
rs56677482	1.00[ASN][1000 genomes]
rs57433931	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60838835	0.89[ASN][1000 genomes]
rs6946876	0.89[ASN][1000 genomes]
rs6947642	0.89[ASN][1000 genomes]
rs6948738	1.00[ASN][1000 genomes]
rs6950996	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73055027	1.00[ASN][1000 genomes]
rs73055040	1.00[ASN][1000 genomes]
rs73055044	1.00[ASN][1000 genomes]
rs73055045	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73055052	1.00[ASN][1000 genomes]
rs73055053	1.00[ASN][1000 genomes]
rs73055054	1.00[ASN][1000 genomes]
rs73055066	0.89[ASN][1000 genomes]
rs73055068	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73055077	0.89[ASN][1000 genomes]
rs73071431	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73071443	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73071447	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73071460	1.00[ASN][1000 genomes]
rs73675911	0.89[ASN][1000 genomes]
rs7811457	0.89[ASN][1000 genomes]
rs9654920	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019888	chr7:10712858-11496785	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv1029836	chr7:10713523-11492751	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv538730	chr7:10713523-11492751	Weak transcription Strong transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv532092	chr7:10731350-11414759	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
5	nsv1024171	chr7:10810444-11559156	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
6	nsv817291	chr7:10875417-11562683	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
7	nsv523279	chr7:11198193-11473561	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv518180	chr7:11198193-11475819	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	nsv1015837	chr7:11208733-11475112	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
10	nsv538732	chr7:11208733-11475112	Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
11	nsv1028326	chr7:11221209-11754436	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
12	nsv538733	chr7:11221209-11754436	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
13	nsv830902	chr7:11336527-11523904	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
14	esv2762650	chr7:11356006-11387485	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
15	nsv1025802	chr7:11371145-11438472	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:11362600-11383200	Weak transcription	Liver	Liver
2	chr7:11375800-11383400	Weak transcription	Adipose Nuclei	Adipose
3	chr7:11376400-11383200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr7:11379400-11381400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr7:11379400-11381400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr7:11379800-11381400	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr7:11379800-11382600	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr7:11380800-11381000	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr7:11380800-11381000	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr7:11380800-11381000	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr7:11380800-11381000	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr7:11380800-11381000	Active TSS	Brain Inferior Temporal Lobe	brain
13	chr7:11380800-11381000	Active TSS	Pancreatic Islets	Pancreatic Islet
14	chr7:11380800-11381200	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr7:11380800-11381200	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr7:11380800-11381200	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr7:11380800-11381200	Active TSS	Brain Anterior Caudate	brain
18	chr7:11380800-11381200	Active TSS	Brain Cingulate Gyrus	brain
19	chr7:11380800-11381200	Active TSS	Brain Hippocampus Middle	brain
20	chr7:11380800-11381200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
21	chr7:11380800-11381200	Enhancers	Duodenum Mucosa	Duodenum
22	chr7:11380800-11381200	Active TSS	Fetal Kidney	kidney
23	chr7:11380800-11381200	Active TSS	Fetal Lung	lung
24	chr7:11380800-11381200	Active TSS	Left Ventricle	heart
25	chr7:11380800-11381200	Active TSS	A549	lung
26	chr7:11380800-11381400	Flanking Active TSS	Ovary	ovary

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