Variant report

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10060568	0.96[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1158196	0.95[CEU][hapmap];0.95[YRI][hapmap];0.83[EUR][1000 genomes]
rs12054892	0.95[CEU][hapmap];0.84[EUR][1000 genomes]
rs12653046	0.95[CEU][hapmap];0.83[EUR][1000 genomes]
rs13354637	0.96[CEU][hapmap];0.83[JPT][hapmap];0.82[EUR][1000 genomes]
rs158986	0.95[YRI][hapmap]
rs158988	0.95[YRI][hapmap]
rs158992	0.95[YRI][hapmap]
rs158994	0.90[YRI][hapmap]
rs158998	0.95[YRI][hapmap]
rs158999	0.85[YRI][hapmap]
rs159001	0.91[YRI][hapmap]
rs159009	0.95[YRI][hapmap]
rs1833611	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs2279980	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2591913	0.90[YRI][hapmap]
rs2591921	0.91[YRI][hapmap]
rs2591923	0.91[YRI][hapmap]
rs2662624	0.91[YRI][hapmap]
rs290572	0.91[YRI][hapmap]
rs292994	0.91[YRI][hapmap]
rs292995	0.91[YRI][hapmap]
rs293016	0.91[YRI][hapmap]
rs293017	0.91[YRI][hapmap]
rs293019	0.81[YRI][hapmap]
rs293031	0.95[YRI][hapmap]
rs49960	0.95[YRI][hapmap]
rs58662773	0.83[EUR][1000 genomes]
rs59064450	0.83[EUR][1000 genomes]
rs6898044	0.96[CEU][hapmap];0.84[EUR][1000 genomes]
rs72760264	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830363	chr5:57893949-58555491	Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1029145	chr5:57905821-58141221	Active TSS Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57911600-57912200	Enhancers	Pancreatic Islets	Pancreatic Islet

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