Variant report

Variant	rs16877379
Chromosome Location	chr5:79271616-79271617
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:79249284..79251451-chr5:79270809..79273026,3	MCF-7	breast:
2	chr5:79269309..79272565-chr5:79276555..79279232,3	MCF-7	breast:
3	chr5:79262485..79266204-chr5:79269459..79273570,3	MCF-7	breast:
4	chr5:79269762..79272110-chr5:79285540..79288359,2	MCF-7	breast:
5	chr5:79271074..79273933-chr5:79292218..79294924,2	K562	blood:

Variant related genes	Relation type
ENSG00000177034	Chromatin interaction
ENSG00000113296	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11749003	0.93[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2404707	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021113	chr5:79034662-79289828	Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:79259400-79272800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
2	chr5:79260600-79286200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr5:79263200-79273200	Weak transcription	Psoas Muscle	Psoas
4	chr5:79267400-79272600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr5:79267400-79272800	Weak transcription	Fetal Brain Female	brain
6	chr5:79267600-79272600	Weak transcription	Primary B cells from peripheral blood	blood
7	chr5:79267600-79273000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr5:79267800-79273600	Weak transcription	Stomach Smooth Muscle	stomach
9	chr5:79268000-79273000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr5:79268000-79273000	Weak transcription	Fetal Intestine Large	intestine
11	chr5:79268000-79273800	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr5:79268200-79273000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr5:79268200-79273000	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr5:79268200-79273000	Weak transcription	GM12878-XiMat	blood
15	chr5:79268400-79273600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr5:79268600-79273000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr5:79269000-79272800	Weak transcription	Primary T cells fromperipheralblood	blood
18	chr5:79269000-79273000	Weak transcription	Aorta	Aorta
19	chr5:79269000-79273000	Weak transcription	Fetal Lung	lung
20	chr5:79269000-79286400	Weak transcription	Thymus	Thymus
21	chr5:79269200-79271800	Enhancers	ES-I3 Cell Line	embryonic stem cell
22	chr5:79269200-79274800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
23	chr5:79269400-79272600	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr5:79269400-79273000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
25	chr5:79269400-79277800	Weak transcription	Hela-S3	cervix
26	chr5:79269400-79279200	Weak transcription	Brain Cingulate Gyrus	brain
27	chr5:79269600-79272800	Weak transcription	Brain Angular Gyrus	brain
28	chr5:79269600-79273200	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr5:79269600-79273200	Weak transcription	Monocytes-CD14+_RO01746	blood
30	chr5:79269600-79273800	Weak transcription	Colonic Mucosa	Colon
31	chr5:79269600-79276000	Weak transcription	Brain Hippocampus Middle	brain
32	chr5:79269600-79276600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
33	chr5:79269600-79277800	Weak transcription	Brain Anterior Caudate	brain
34	chr5:79269800-79272600	Weak transcription	Primary T helper cells PMA-I stimulated	--
35	chr5:79269800-79272800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr5:79269800-79272800	Weak transcription	Skeletal Muscle Female	skeletal muscle
37	chr5:79269800-79273600	Weak transcription	Cortex derived primary cultured neurospheres	brain
38	chr5:79269800-79273600	Weak transcription	Brain Germinal Matrix	brain
39	chr5:79269800-79279200	Weak transcription	Brain Substantia Nigra	brain
40	chr5:79269800-79279400	Weak transcription	Lung	lung
41	chr5:79269800-79281400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
42	chr5:79269800-79286000	Weak transcription	Fetal Heart	heart
43	chr5:79270000-79272800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
44	chr5:79270000-79273000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr5:79270000-79273000	Weak transcription	Duodenum Smooth Muscle	Duodenum
46	chr5:79270000-79273800	Weak transcription	Esophagus	oesophagus
47	chr5:79270000-79276400	Strong transcription	Primary B cells from cord blood	blood
48	chr5:79270000-79276400	Weak transcription	Fetal Kidney	kidney
49	chr5:79270000-79286000	Weak transcription	Rectal Smooth Muscle	rectum
50	chr5:79270200-79276000	Weak transcription	Colon Smooth Muscle	Colon

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