Variant report

Variant	rs16877620
Chromosome Location	chr6:16093425-16093426
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11966052	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12524068	0.85[CEU][hapmap]
rs16877619	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7744733	0.93[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9969015	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs16877620	DTNBP1	cis	cerebellum	SCAN

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:16089800-16098400	Weak transcription	Pancreas	Pancrea
2	chr6:16089800-16100200	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr6:16092200-16093600	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr6:16092200-16093600	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr6:16092200-16093600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr6:16092200-16093600	Enhancers	HUVEC	blood vessel
7	chr6:16092400-16093600	Enhancers	Primary hematopoietic stem cells	blood
8	chr6:16092600-16093600	Enhancers	GM12878-XiMat	blood
9	chr6:16092600-16095600	Weak transcription	Psoas Muscle	Psoas
10	chr6:16093400-16093600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
11	chr6:16093400-16096800	Weak transcription	K562	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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