Variant report

Variant	rs16878220
Chromosome Location	chr7:14590746-14590747
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1012555	0.82[ASN][1000 genomes]
rs10236893	1.00[CEU][hapmap];0.91[CHB][hapmap];0.89[JPT][hapmap]
rs10245632	1.00[CEU][hapmap];0.90[CHB][hapmap];0.88[JPT][hapmap];0.92[YRI][hapmap]
rs10246573	1.00[CEU][hapmap];0.91[CHB][hapmap];0.89[JPT][hapmap];0.94[YRI][hapmap]
rs10252073	1.00[CEU][hapmap];0.90[CHB][hapmap];0.88[JPT][hapmap]
rs10257158	1.00[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.94[JPT][hapmap];0.83[MEX][hapmap];0.90[TSI][hapmap]
rs10499450	1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.84[GIH][hapmap];0.89[JPT][hapmap];0.91[MEX][hapmap];0.90[TSI][hapmap]
rs10499452	1.00[CEU][hapmap]
rs12533779	0.81[TSI][hapmap]
rs17168243	0.88[TSI][hapmap]
rs17168266	1.00[CEU][hapmap];0.91[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap]
rs1897301	1.00[CEU][hapmap]
rs7796936	0.95[CHB][hapmap];0.97[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.90[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949033	chr7:14086106-14860323	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv915603	chr7:14443884-14624268	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv887708	chr7:14494508-14617982	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1022267	chr7:14551894-14607627	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv887709	chr7:14562957-14604898	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv887710	chr7:14587948-14653702	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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