Variant report

Variant	rs16878786
Chromosome Location	chr6:49120316-49120317
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs16878781	1.00[AFR][1000 genomes]
rs16878784	1.00[AFR][1000 genomes]
rs16878815	0.95[AFR][1000 genomes]
rs35888280	1.00[AFR][1000 genomes]
rs4291096	1.00[AFR][1000 genomes]
rs56768839	1.00[AFR][1000 genomes]
rs73431710	1.00[AFR][1000 genomes]
rs73431723	1.00[AFR][1000 genomes]
rs73431728	1.00[AFR][1000 genomes]
rs73431730	1.00[AFR][1000 genomes]
rs73431737	1.00[AFR][1000 genomes]
rs73431757	0.95[AFR][1000 genomes]
rs73431764	0.95[AFR][1000 genomes]
rs7743467	1.00[AFR][1000 genomes]
rs9918441	1.00[AFR][1000 genomes]
rs9918457	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949690	chr6:48595821-49289855	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv603049	chr6:48931959-49169337	Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv2755862	chr6:49081541-49298041	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:49112000-49122600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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