Variant report

Variant	rs16878935
Chromosome Location	chr5:90650327-90650328
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs2287875	0.88[CEU][hapmap]
rs2303130	0.88[CEU][hapmap]
rs56259969	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024813	chr5:90321535-90870739	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
2	nsv537806	chr5:90321535-90870739	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:90646400-90663800	Weak transcription	Thymus	Thymus
2	chr5:90647600-90650400	Weak transcription	Fetal Thymus	thymus
3	chr5:90647800-90653000	Weak transcription	Hela-S3	cervix
4	chr5:90649600-90663200	Weak transcription	Stomach Smooth Muscle	stomach
5	chr5:90649800-90652400	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr5:90650000-90651800	Enhancers	Primary B cells from cord blood	blood
7	chr5:90650200-90650800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
8	chr5:90650200-90650800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
9	chr5:90650200-90651400	Enhancers	Primary hematopoietic stem cells	blood
10	chr5:90650200-90651400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr5:90650200-90651600	Enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr5:90650200-90651800	Enhancers	Primary neutrophils fromperipheralblood	blood
13	chr5:90650200-90651800	Enhancers	Primary B cells from peripheral blood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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