Variant report

Variant	rs16879056
Chromosome Location	chr5:7784166-7784167
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs16879046	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16879109	0.84[YRI][hapmap];0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73737626	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73737627	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73737629	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73737632	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916892	chr5:7634377-8158890	Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv949492	chr5:7682909-7953909	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv533983	chr5:7701457-8275379	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
4	nsv1024268	chr5:7707047-7821303	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv461927	chr5:7757812-7854289	Active TSS Enhancers Bivalent/Poised TSS Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv597004	chr5:7757812-7854289	Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:7719000-7785000	Weak transcription	Aorta	Aorta
2	chr5:7755600-7789600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr5:7755600-7794200	Weak transcription	Ovary	ovary
4	chr5:7756400-7799600	Weak transcription	Fetal Intestine Small	intestine
5	chr5:7758400-7792600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr5:7758800-7785200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr5:7760000-7792800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr5:7760600-7792400	Weak transcription	Fetal Stomach	stomach
9	chr5:7762800-7792400	Weak transcription	Psoas Muscle	Psoas
10	chr5:7773600-7785200	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr5:7775000-7784800	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr5:7777400-7790000	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr5:7778200-7785200	Weak transcription	Colon Smooth Muscle	Colon
14	chr5:7779000-7792800	Weak transcription	Stomach Smooth Muscle	stomach
15	chr5:7779800-7793800	Weak transcription	Brain Anterior Caudate	brain
16	chr5:7780000-7793800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr5:7780200-7793600	Weak transcription	Brain Substantia Nigra	brain
18	chr5:7780200-7816400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr5:7780600-7785400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr5:7782000-7794000	Weak transcription	Brain Cingulate Gyrus	brain
21	chr5:7782600-7785400	Enhancers	HUES48 Cell Line	embryonic stem cell
22	chr5:7782800-7793800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr5:7783000-7784400	Enhancers	H1 Cell Line	embryonic stem cell
24	chr5:7783000-7785600	Enhancers	H9 Cell Line	embryonic stem cell
25	chr5:7783000-7811800	Weak transcription	Brain Angular Gyrus	brain
26	chr5:7783400-7794200	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr5:7783400-7794400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr5:7783600-7784400	Weak transcription	HUES64 Cell Line	embryonic stem cell
29	chr5:7783600-7784800	Enhancers	iPS-20b Cell Line	embryonic stem cell
30	chr5:7783800-7784800	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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