Variant report

Variant	rs16879186
Chromosome Location	chr5:7824421-7824422
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs16879218	1.00[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs2277000	0.95[ASN][1000 genomes]
rs3214065	0.82[CHB][hapmap]
rs329831	1.00[LWK][hapmap]
rs34079017	0.98[ASN][1000 genomes]
rs3797192	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916892	chr5:7634377-8158890	Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv949492	chr5:7682909-7953909	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv533983	chr5:7701457-8275379	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
4	nsv461927	chr5:7757812-7854289	Active TSS Enhancers Bivalent/Poised TSS Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv597004	chr5:7757812-7854289	Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	esv3354956	chr5:7823152-7827350	Strong transcription ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Genic enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv3342215	chr5:7824002-7826800	Strong transcription Weak transcription Active TSS Enhancers Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:7803800-7824800	Weak transcription	Aorta	Aorta
2	chr5:7808400-7827000	Weak transcription	Brain Substantia Nigra	brain
3	chr5:7816400-7825200	Weak transcription	Fetal Intestine Small	intestine
4	chr5:7816600-7827000	Weak transcription	Ovary	ovary
5	chr5:7816800-7827400	Weak transcription	Brain Hippocampus Middle	brain
6	chr5:7816800-7828800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr5:7817000-7826800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr5:7817000-7828000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr5:7817200-7825200	Weak transcription	Pancreas	Pancrea
10	chr5:7817200-7826400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr5:7817400-7824800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr5:7817800-7825200	Weak transcription	Gastric	stomach
13	chr5:7818400-7828200	Weak transcription	Fetal Brain Female	brain
14	chr5:7819200-7829200	Strong transcription	Skeletal Muscle Female	skeletal muscle
15	chr5:7820000-7830200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr5:7820200-7824800	Weak transcription	Brain Cingulate Gyrus	brain
17	chr5:7820200-7828400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr5:7820800-7825000	Weak transcription	Esophagus	oesophagus
19	chr5:7821400-7825800	Strong transcription	HUES6 Cell Line	embryonic stem cell
20	chr5:7822000-7824600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr5:7822000-7825200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr5:7822000-7828600	Weak transcription	Brain Angular Gyrus	brain
23	chr5:7822000-7829000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
24	chr5:7822200-7826400	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr5:7822200-7827000	Weak transcription	Primary neutrophils fromperipheralblood	blood
26	chr5:7822200-7828200	Weak transcription	Brain Anterior Caudate	brain
27	chr5:7822400-7824600	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr5:7823000-7824600	Weak transcription	Stomach Smooth Muscle	stomach
29	chr5:7823200-7824600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr5:7823400-7826400	Weak transcription	HUES64 Cell Line	embryonic stem cell
31	chr5:7823600-7824600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
32	chr5:7823600-7824800	Weak transcription	H1 Cell Line	embryonic stem cell
33	chr5:7823600-7824800	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr5:7823800-7825000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr5:7824000-7824600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr5:7824000-7827400	Weak transcription	Brain Germinal Matrix	brain
37	chr5:7824400-7827600	Strong transcription	Fetal Stomach	stomach
38	chr5:7824400-7827800	Strong transcription	Skeletal Muscle Male	skeletal muscle

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