Variant report

Variant	rs16879526
Chromosome Location	chr6:88243441-88243442
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:88242881..88244903-chr6:88410531..88412798,2	K562	blood:
2	chr6:88237611..88240800-chr6:88241958..88245362,3	MCF-7	breast:
3	chr6:88241091..88243670-chr6:88260945..88262832,2	K562	blood:
4	chr6:88240458..88244227-chr6:88248910..88253061,5	K562	blood:

Variant related genes	Relation type
ENSG00000135334	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs7748563	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018155	chr6:88049729-88272862	Strong transcription Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1031961	chr6:88110401-88367006	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv1031460	chr6:88153079-88410050	Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv1026482	chr6:88164934-88409728	Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
5	nsv1027706	chr6:88168987-88409728	Genic enhancers Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:88194000-88249000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr6:88212000-88245200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:88214200-88244400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr6:88217800-88295800	Weak transcription	Fetal Brain Male	brain
5	chr6:88219000-88249000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr6:88220000-88244200	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr6:88225000-88250800	Weak transcription	Stomach Mucosa	stomach
8	chr6:88227000-88250200	Weak transcription	Fetal Heart	heart
9	chr6:88227800-88298800	Weak transcription	Esophagus	oesophagus
10	chr6:88228400-88250200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr6:88228400-88298400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr6:88228600-88244200	Weak transcription	Aorta	Aorta
13	chr6:88228600-88244400	Weak transcription	Fetal Stomach	stomach
14	chr6:88228600-88249800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr6:88228600-88254000	Weak transcription	Gastric	stomach
16	chr6:88228600-88262800	Weak transcription	Small Intestine	intestine
17	chr6:88228600-88271400	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr6:88228600-88285200	Weak transcription	Spleen	Spleen
19	chr6:88228800-88244400	Weak transcription	Pancreas	Pancrea
20	chr6:88228800-88253800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr6:88228800-88269600	Weak transcription	Brain Cingulate Gyrus	brain
22	chr6:88229400-88248800	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr6:88229400-88248800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr6:88229400-88249000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr6:88229400-88261600	Weak transcription	Rectal Smooth Muscle	rectum
26	chr6:88229400-88271200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
27	chr6:88229600-88244000	Weak transcription	Hela-S3	cervix
28	chr6:88229600-88254000	Weak transcription	Brain Anterior Caudate	brain
29	chr6:88229600-88289000	Weak transcription	Lung	lung
30	chr6:88230000-88249200	Weak transcription	Fetal Lung	lung
31	chr6:88230000-88267000	Weak transcription	Brain Substantia Nigra	brain
32	chr6:88230400-88271200	Weak transcription	Colon Smooth Muscle	Colon
33	chr6:88230600-88248600	Weak transcription	HMEC	breast
34	chr6:88230600-88249000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr6:88230600-88254400	Weak transcription	Psoas Muscle	Psoas
36	chr6:88230800-88249000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
37	chr6:88230800-88249000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
38	chr6:88230800-88249800	Weak transcription	Ovary	ovary
39	chr6:88230800-88250600	Weak transcription	HSMMtube	muscle
40	chr6:88230800-88261600	Weak transcription	Brain Hippocampus Middle	brain
41	chr6:88231200-88262800	Weak transcription	Brain Angular Gyrus	brain
42	chr6:88231200-88264200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
43	chr6:88232800-88244800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr6:88237000-88248600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr6:88237000-88249200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr6:88237200-88244400	Weak transcription	Fetal Intestine Small	intestine
47	chr6:88237800-88248800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
48	chr6:88237800-88248800	Weak transcription	GM12878-XiMat	blood
49	chr6:88238000-88249000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
50	chr6:88238800-88253200	Weak transcription	K562	blood

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