Variant report

Variant	rs16880011
Chromosome Location	chr8:110780717-110780718
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10505130	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11998544	1.00[EUR][1000 genomes]
rs16879997	1.00[EUR][1000 genomes]
rs59527813	1.00[EUR][1000 genomes]
rs6994567	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv611880	chr8:110762913-110821596	Enhancers Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:110779400-110781800	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr8:110780400-110781000	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr8:110780400-110781000	Enhancers	Brain Cingulate Gyrus	brain
4	chr8:110780600-110781000	Enhancers	Brain Anterior Caudate	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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