Variant report

Variant rs16880541
Chromosome Location chr5:52239555-52239556
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:45 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:52202200-52252200 Weak transcription Small Intestine intestine
2 chr5:52206400-52240800 Weak transcription Rectal Smooth Muscle rectum
3 chr5:52211400-52240200 Weak transcription Skeletal Muscle Male skeletal muscle
4 chr5:52211600-52244400 Weak transcription HepG2 liver
5 chr5:52218600-52242200 Weak transcription Fetal Kidney kidney
6 chr5:52218800-52240800 Weak transcription Skeletal Muscle Female skeletal muscle
7 chr5:52219200-52240800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
8 chr5:52219200-52240800 Weak transcription NHLF lung
9 chr5:52220000-52243000 Weak transcription Gastric stomach
10 chr5:52220600-52252000 Weak transcription Sigmoid Colon Sigmoid Colon
11 chr5:52221400-52240600 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
12 chr5:52221400-52251800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
13 chr5:52224200-52244600 Weak transcription Primary T cells from cord blood blood
14 chr5:52225200-52239800 Weak transcription Rectal Mucosa Donor 29 rectum
15 chr5:52227000-52240800 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
16 chr5:52228400-52240800 Weak transcription Duodenum Mucosa Duodenum
17 chr5:52229000-52246600 Weak transcription Rectal Mucosa Donor 31 rectum
18 chr5:52231600-52245400 Weak transcription Colonic Mucosa Colon
19 chr5:52232200-52240600 Strong transcription Fetal Adrenal Gland Adrenal Gland
20 chr5:52232800-52249800 Weak transcription Left Ventricle heart
21 chr5:52235000-52240000 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
22 chr5:52235000-52240800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
23 chr5:52235400-52243200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
24 chr5:52236000-52240400 Weak transcription NHDF-Ad bronchial
25 chr5:52236000-52240800 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
26 chr5:52237000-52240800 Weak transcription Colon Smooth Muscle Colon
27 chr5:52237200-52240000 Weak transcription Dnd41 blood
28 chr5:52237400-52240600 Weak transcription Duodenum Smooth Muscle Duodenum
29 chr5:52237400-52240800 Weak transcription Adipose Nuclei Adipose
30 chr5:52238800-52240200 Strong transcription Fetal Lung lung
31 chr5:52238800-52252200 Strong transcription Liver Liver
32 chr5:52239000-52240400 Strong transcription Fetal Intestine Large intestine
33 chr5:52239200-52239600 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
34 chr5:52239200-52240000 Strong transcription Placenta Placenta
35 chr5:52239200-52240000 Genic enhancers Stomach Smooth Muscle stomach
36 chr5:52239200-52240200 Genic enhancers Spleen Spleen
37 chr5:52239400-52239800 Enhancers iPS DF 19.11 Cell Line embryonic stem cell
38 chr5:52239400-52239800 Strong transcription Lung lung
39 chr5:52239400-52239800 Strong transcription Right Ventricle heart
40 chr5:52239400-52240000 Strong transcription Aorta Aorta
41 chr5:52239400-52240000 Enhancers Esophagus oesophagus
42 chr5:52239400-52240200 Strong transcription Breast Myoepithelial Primary Cells Breast
43 chr5:52239400-52240200 Strong transcription Fetal Intestine Small intestine
44 chr5:52239400-52240200 Strong transcription Fetal Muscle Leg muscle
45 chr5:52239400-52240200 Strong transcription Fetal Stomach stomach

Quick Search:


  
Input of quick search could be:

what's new

Quick links