Variant report

Variant	rs16880686
Chromosome Location	chr6:69548447-69548448
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11967527	1.00[EUR][1000 genomes]
rs16900272	0.86[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59854565	1.00[EUR][1000 genomes]
rs6455294	1.00[EUR][1000 genomes]
rs6905504	1.00[EUR][1000 genomes]
rs73745883	1.00[EUR][1000 genomes]
rs73745884	1.00[EUR][1000 genomes]
rs9446055	1.00[AMR][1000 genomes]
rs9454612	1.00[AMR][1000 genomes]
rs9454614	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886132	chr6:69487204-69610281	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69546600-69550800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr6:69548000-69549200	Enhancers	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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