Variant report

Variant	rs16881566
Chromosome Location	chr7:47694221-47694222
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOSL2	chr7:47693316-47694464	A549	lung:	n/a	n/a
2	RPC155	chr7:47693546-47694439	Hela-S3	cervix:	n/a	n/a
3	RCOR1	chr7:47693272-47694660	IMR90	lung:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:47691927..47694720-chr7:47708904..47710828,2	MCF-7	breast:

Variant related genes	Relation type
C7orf65	TF binding region

Extended variants
information (count: 5 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs56826338	1.00[AMR][1000 genomes]
rs73697723	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73697725	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73697726	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026223	chr7:47560728-48243287	Genic enhancers Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs16881566	CHI3L2	trans	lymphoblastoid	seeQTL

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:47687200-47695000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr7:47689800-47694800	Enhancers	NH-A	brain
3	chr7:47690000-47695000	Enhancers	NHDF-Ad	bronchial
4	chr7:47690400-47694800	Enhancers	NHLF	lung
5	chr7:47690600-47695600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr7:47691600-47694400	Weak transcription	Adipose Nuclei	Adipose
7	chr7:47692200-47694600	Enhancers	HSMMtube	muscle
8	chr7:47692600-47694800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr7:47693000-47694600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr7:47693000-47694800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr7:47693200-47694800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr7:47693200-47695000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr7:47693200-47695000	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr7:47693200-47695200	Enhancers	Fetal Muscle Leg	muscle
15	chr7:47693200-47695400	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr7:47693200-47695400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
17	chr7:47693200-47695400	Enhancers	Placenta	Placenta
18	chr7:47693400-47694400	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr7:47693400-47694600	Enhancers	HUES6 Cell Line	embryonic stem cell
20	chr7:47693400-47694800	Enhancers	HUES48 Cell Line	embryonic stem cell
21	chr7:47693400-47694800	Enhancers	Fetal Muscle Trunk	muscle
22	chr7:47693400-47694800	Enhancers	HMEC	breast
23	chr7:47693400-47695000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr7:47693400-47695000	Enhancers	HSMM	muscle
25	chr7:47693400-47695400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr7:47693600-47694600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr7:47693600-47695000	Enhancers	H1 Cell Line	embryonic stem cell
28	chr7:47693600-47695000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr7:47693600-47695200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr7:47693800-47694600	Weak transcription	HUES64 Cell Line	embryonic stem cell
31	chr7:47693800-47694600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr7:47693800-47694600	Enhancers	Hela-S3	cervix
33	chr7:47693800-47695200	Enhancers	Muscle Satellite Cultured Cells	--
34	chr7:47693800-47695400	Enhancers	A549	lung
35	chr7:47693800-47697800	Weak transcription	HepG2	liver
36	chr7:47694000-47694800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr7:47694200-47694400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
38	chr7:47694200-47694400	Flanking Active TSS	Osteobl	bone
39	chr7:47694200-47694600	Enhancers	iPS-20b Cell Line	embryonic stem cell
40	chr7:47694200-47694600	Weak transcription	Spleen	Spleen
41	chr7:47694200-47694800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr7:47694200-47694800	Enhancers	Cortex derived primary cultured neurospheres	brain
43	chr7:47694200-47694800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr7:47694200-47694800	Enhancers	Brain Germinal Matrix	brain
45	chr7:47694200-47694800	Weak transcription	Lung	lung

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