Variant report

Variant	rs16882052
Chromosome Location	chr5:1644507-1644508
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:1559974..1562443-chr5:1642820..1645262,2	K562	blood:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1106135	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1106136	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12651871	0.81[ASN][1000 genomes]
rs12658142	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16882341	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1827192	0.81[ASN][1000 genomes]
rs1827193	0.81[ASN][1000 genomes]
rs2937005	0.95[CHB][hapmap];0.87[JPT][hapmap]
rs34576087	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4510616	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4551124	0.89[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56775155	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56871414	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59875755	0.87[ASN][1000 genomes]
rs60232939	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62335943	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62335953	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62335957	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62335958	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62335959	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62336862	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62336864	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62336869	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62336870	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62336897	0.86[AMR][1000 genomes]
rs62336905	0.90[AMR][1000 genomes]
rs6891307	0.85[ASN][1000 genomes]
rs6893515	0.81[CHB][hapmap]
rs72719216	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72719251	0.93[AMR][1000 genomes]
rs72719272	0.90[AMR][1000 genomes]
rs874405	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933805	chr5:1450724-1941619	Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Strong transcription Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
2	nsv880740	chr5:1468287-1671200	Weak transcription Strong transcription Active TSS Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	49 gene(s)	inside rSNPs	diseases
3	nsv881554	chr5:1468287-1696932	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	49 gene(s)	inside rSNPs	diseases
4	nsv817407	chr5:1495354-2191460	Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	107 gene(s)	inside rSNPs	diseases
5	nsv881096	chr5:1503610-1671200	Flanking Bivalent TSS/Enh Strong transcription Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	48 gene(s)	inside rSNPs	diseases
6	nsv880390	chr5:1612612-1653418	Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
7	nsv880788	chr5:1629407-1671200	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
8	nsv881328	chr5:1637461-1671200	Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
9	esv3421865	chr5:1644501-1645028	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:1634600-1645000	Weak transcription	Right Atrium	heart
2	chr5:1634600-1645200	Weak transcription	Gastric	stomach
3	chr5:1643600-1645000	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
4	chr5:1643600-1645000	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
5	chr5:1643600-1645600	Bivalent Enhancer	Primary T killer naive cells fromperipheralblood	blood
6	chr5:1643800-1644600	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
7	chr5:1644000-1644600	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
8	chr5:1644000-1644800	Bivalent/Poised TSS	Hela-S3	cervix
9	chr5:1644000-1645200	Bivalent Enhancer	Primary T killer memory cells from peripheral blood	blood
10	chr5:1644200-1644600	Flanking Bivalent TSS/Enh	Primary T cells from cord blood	blood
11	chr5:1644200-1644600	Flanking Bivalent TSS/Enh	Primary T helper naive cells fromperipheralblood	blood
12	chr5:1644200-1645000	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 2	blood
13	chr5:1644200-1645400	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
14	chr5:1644200-1645600	Bivalent Enhancer	Primary T helper naive cells from peripheral blood	blood
15	chr5:1644200-1645800	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
16	chr5:1644400-1644600	Flanking Bivalent TSS/Enh	ES-WA7 Cell Line	embryonic stem cell
17	chr5:1644400-1644600	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
18	chr5:1644400-1644600	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
19	chr5:1644400-1644600	Flanking Bivalent TSS/Enh	Primary T helper cells PMA-I stimulated	--
20	chr5:1644400-1644600	Flanking Bivalent TSS/Enh	Primary T regulatory cells fromperipheralblood	blood
21	chr5:1644400-1644600	Bivalent/Poised TSS	Brain Inferior Temporal Lobe	brain
22	chr5:1644400-1644600	Bivalent Enhancer	Fetal Heart	heart
23	chr5:1644400-1644600	Bivalent Enhancer	Dnd41	blood
24	chr5:1644400-1644800	Bivalent Enhancer	Fetal Brain Female	brain
25	chr5:1644400-1645000	Bivalent Enhancer	Duodenum Mucosa	Duodenum
26	chr5:1644400-1645000	Bivalent Enhancer	Stomach Smooth Muscle	stomach
27	chr5:1644400-1645200	Bivalent Enhancer	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr5:1644400-1645200	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr5:1644400-1645200	Bivalent Enhancer	Brain Hippocampus Middle	brain
30	chr5:1644400-1645200	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
31	chr5:1644400-1645400	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr5:1644400-1645400	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
33	chr5:1644400-1645400	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
34	chr5:1644400-1645600	Bivalent Enhancer	Primary B cells from peripheral blood	blood
35	chr5:1644400-1645600	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
36	chr5:1644400-1645800	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
37	chr5:1644400-1645800	Bivalent Enhancer	Primary B cells from cord blood	blood

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