Variant report

Variant	rs16883059
Chromosome Location	chr6:73647795-73647796
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11962902	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11969224	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16883037	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1935517	1.00[CHB][hapmap]
rs34779979	0.83[ASN][1000 genomes]
rs55892007	1.00[ASN][1000 genomes]
rs57297293	1.00[ASN][1000 genomes]
rs57695167	1.00[ASN][1000 genomes]
rs73753206	1.00[ASN][1000 genomes]
rs73753213	1.00[ASN][1000 genomes]
rs7741305	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9446792	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830691	chr6:73530978-73743648	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
2	nsv886155	chr6:73551937-73649330	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73607600-73715400	Weak transcription	Primary B cells from cord blood	blood
2	chr6:73624600-73658600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr6:73630000-73648400	Weak transcription	Aorta	Aorta
4	chr6:73642200-73651400	Weak transcription	Fetal Brain Male	brain
5	chr6:73646000-73647800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr6:73647000-73648000	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr6:73647000-73648800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr6:73647200-73649800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links